Strain Fitness in Pseudomonas sp. S08-1 around OH686_12645

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12635 and OH686_12640 are separated by 13 nucleotidesOH686_12640 and OH686_12645 overlap by 8 nucleotidesOH686_12645 and OH686_12650 are separated by 3 nucleotides OH686_12635: OH686_12635 - ribosomal protein L34, at 2,657,417 to 2,657,551 _12635 OH686_12640: OH686_12640 - ribonuclease P protein component, at 2,657,565 to 2,657,960 _12640 OH686_12645: OH686_12645 - putative membrane protein insertion efficiency factor, at 2,657,953 to 2,658,189 _12645 OH686_12650: OH686_12650 - Inner membrane protein translocase and chaperone YidC, long form, at 2,658,193 to 2,659,863 _12650 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -2 -1 0 1 2at 2656.964 kb on - strandat 2657.007 kb on + strandat 2657.008 kb on - strandat 2657.011 kb on + strandat 2657.012 kb on - strandat 2657.060 kb on + strandat 2657.060 kb on + strandat 2657.061 kb on - strandat 2657.061 kb on - strandat 2657.061 kb on - strandat 2657.061 kb on - strandat 2657.061 kb on - strandat 2657.076 kb on - strandat 2657.076 kb on - strandat 2657.089 kb on + strandat 2657.117 kb on - strandat 2657.185 kb on + strandat 2657.185 kb on + strandat 2657.186 kb on - strandat 2657.251 kb on - strandat 2657.253 kb on + strandat 2657.253 kb on + strandat 2657.253 kb on + strandat 2657.253 kb on + strandat 2657.253 kb on + strandat 2657.253 kb on + strandat 2657.254 kb on - strandat 2657.260 kb on + strandat 2657.260 kb on + strandat 2657.260 kb on + strandat 2657.260 kb on + strandat 2657.260 kb on + strandat 2657.261 kb on - strandat 2657.261 kb on - strandat 2657.266 kb on + strandat 2657.266 kb on + strandat 2657.267 kb on - strandat 2657.267 kb on - strandat 2657.296 kb on + strandat 2657.296 kb on + strandat 2657.305 kb on + strandat 2657.305 kb on + strandat 2657.306 kb on - strandat 2657.306 kb on - strandat 2657.306 kb on - strandat 2657.306 kb on - strandat 2657.306 kb on - strandat 2657.552 kb on + strandat 2657.552 kb on + strandat 2657.938 kb on + strandat 2657.958 kb on + strandat 2657.958 kb on + strandat 2657.972 kb on + strandat 2658.031 kb on + strand, within OH686_12645at 2658.031 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.049 kb on + strand, within OH686_12645at 2658.145 kb on + strand, within OH686_12645at 2658.145 kb on + strand, within OH686_12645

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,656,964 - +0.2
2,657,007 + +0.2
2,657,008 - -0.8
2,657,011 + -2.2
2,657,012 - -0.3
2,657,060 + +0.5
2,657,060 + -0.5
2,657,061 - -0.2
2,657,061 - -0.3
2,657,061 - +0.7
2,657,061 - -1.0
2,657,061 - -0.8
2,657,076 - -0.2
2,657,076 - -1.0
2,657,089 + +0.1
2,657,117 - -0.4
2,657,185 + +0.1
2,657,185 + +0.2
2,657,186 - -2.1
2,657,251 - -0.6
2,657,253 + +0.7
2,657,253 + -0.4
2,657,253 + +0.6
2,657,253 + -2.1
2,657,253 + +1.2
2,657,253 + +0.7
2,657,254 - +0.8
2,657,260 + -1.0
2,657,260 + -0.1
2,657,260 + +0.9
2,657,260 + -0.4
2,657,260 + -0.5
2,657,261 - +0.9
2,657,261 - +0.9
2,657,266 + +0.6
2,657,266 + -0.1
2,657,267 - -0.1
2,657,267 - +0.1
2,657,296 + +1.8
2,657,296 + +0.9
2,657,305 + -0.4
2,657,305 + -0.4
2,657,306 - -0.1
2,657,306 - +0.1
2,657,306 - +0.0
2,657,306 - -0.0
2,657,306 - -0.5
2,657,552 + -0.1
2,657,552 + +0.1
2,657,938 + +0.7
2,657,958 + -2.0
2,657,958 + -0.2
2,657,972 + -2.4
2,658,031 + OH686_12645 0.33 +0.2
2,658,031 + OH686_12645 0.33 -0.3
2,658,049 + OH686_12645 0.41 -0.8
2,658,049 + OH686_12645 0.41 +0.7
2,658,049 + OH686_12645 0.41 +1.8
2,658,049 + OH686_12645 0.41 -0.5
2,658,049 + OH686_12645 0.41 -0.4
2,658,049 + OH686_12645 0.41 -0.1
2,658,049 + OH686_12645 0.41 +1.1
2,658,049 + OH686_12645 0.41 -1.5
2,658,145 + OH686_12645 0.81 +0.4
2,658,145 + OH686_12645 0.81 +0.7

Or see this region's nucleotide sequence