Strain Fitness in Pseudomonas sp. S08-1 around OH686_09520

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09515 and OH686_09520 are separated by 42 nucleotidesOH686_09520 and OH686_09525 are separated by 16 nucleotidesOH686_09525 and OH686_09530 are separated by 120 nucleotides OH686_09515: OH686_09515 - ribosome small subunit-dependent GTPase A, at 1,941,922 to 1,942,953 _09515 OH686_09520: OH686_09520 - Flagellar motor rotation protein MotB, at 1,942,996 to 1,944,036 _09520 OH686_09525: OH686_09525 - flagellar motor stator protein MotA, at 1,944,053 to 1,944,904 _09525 OH686_09530: OH686_09530 - Predicted signal transduction protein, at 1,945,025 to 1,946,545 _09530 Position (kb) 1942 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1 2at 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.949 kb on - strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1942.954 kb on + strandat 1943.273 kb on + strand, within OH686_09520at 1943.273 kb on + strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.274 kb on - strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.325 kb on + strand, within OH686_09520at 1943.326 kb on - strand, within OH686_09520at 1943.326 kb on - strand, within OH686_09520at 1943.368 kb on - strand, within OH686_09520at 1943.407 kb on - strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.480 kb on + strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.481 kb on - strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.819 kb on + strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.820 kb on - strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.917 kb on + strand, within OH686_09520at 1943.934 kb on + strandat 1943.935 kb on - strandat 1943.935 kb on - strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.041 kb on + strandat 1944.042 kb on - strandat 1944.042 kb on - strandat 1944.192 kb on + strand, within OH686_09525at 1944.192 kb on + strand, within OH686_09525at 1944.192 kb on + strand, within OH686_09525at 1944.192 kb on + strand, within OH686_09525at 1944.192 kb on + strand, within OH686_09525at 1944.192 kb on + strand, within OH686_09525at 1944.193 kb on - strand, within OH686_09525at 1944.193 kb on - strand, within OH686_09525at 1944.193 kb on - strand, within OH686_09525at 1944.255 kb on + strand, within OH686_09525at 1944.256 kb on - strand, within OH686_09525at 1944.256 kb on - strand, within OH686_09525at 1944.522 kb on + strand, within OH686_09525at 1944.522 kb on + strand, within OH686_09525at 1944.522 kb on + strand, within OH686_09525at 1944.522 kb on + strand, within OH686_09525at 1944.523 kb on - strand, within OH686_09525at 1944.523 kb on - strand, within OH686_09525at 1944.523 kb on - strand, within OH686_09525at 1944.523 kb on - strand, within OH686_09525at 1944.570 kb on + strand, within OH686_09525at 1944.570 kb on + strand, within OH686_09525at 1944.570 kb on + strand, within OH686_09525at 1944.570 kb on + strand, within OH686_09525at 1944.571 kb on - strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.628 kb on + strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.629 kb on - strand, within OH686_09525at 1944.661 kb on - strand, within OH686_09525at 1944.661 kb on - strand, within OH686_09525at 1944.661 kb on - strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.684 kb on + strand, within OH686_09525at 1944.685 kb on - strand, within OH686_09525at 1944.685 kb on - strand, within OH686_09525at 1944.685 kb on - strand, within OH686_09525at 1944.685 kb on - strand, within OH686_09525at 1944.944 kb on + strandat 1944.944 kb on + strandat 1944.958 kb on + strandat 1944.958 kb on + strandat 1944.958 kb on + strandat 1944.958 kb on + strandat 1944.959 kb on - strandat 1944.959 kb on - strandat 1944.959 kb on - strandat 1944.959 kb on - strandat 1944.959 kb on - strandat 1944.971 kb on + strandat 1944.971 kb on + strandat 1944.972 kb on - strandat 1944.972 kb on - strandat 1944.972 kb on - strandat 1944.984 kb on + strandat 1944.984 kb on + strandat 1944.984 kb on + strandat 1944.984 kb on + strandat 1944.985 kb on - strandat 1944.985 kb on - strandat 1944.985 kb on - strandat 1944.986 kb on + strandat 1944.986 kb on + strandat 1944.987 kb on - strandat 1944.987 kb on - strandat 1944.993 kb on + strandat 1944.994 kb on - strandat 1944.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,942,949 - +0.5
1,942,949 - -0.1
1,942,949 - -1.0
1,942,949 - +0.4
1,942,954 + +1.5
1,942,954 + -1.2
1,942,954 + -0.2
1,942,954 + +0.2
1,943,273 + OH686_09520 0.27 +0.1
1,943,273 + OH686_09520 0.27 +1.0
1,943,274 - OH686_09520 0.27 +0.4
1,943,274 - OH686_09520 0.27 +0.1
1,943,274 - OH686_09520 0.27 -1.1
1,943,325 + OH686_09520 0.32 +1.6
1,943,325 + OH686_09520 0.32 +0.4
1,943,325 + OH686_09520 0.32 +1.0
1,943,326 - OH686_09520 0.32 +0.4
1,943,326 - OH686_09520 0.32 +0.8
1,943,368 - OH686_09520 0.36 +0.6
1,943,407 - OH686_09520 0.39 -0.7
1,943,480 + OH686_09520 0.46 +0.3
1,943,480 + OH686_09520 0.46 -0.1
1,943,480 + OH686_09520 0.46 +0.3
1,943,480 + OH686_09520 0.46 -0.0
1,943,481 - OH686_09520 0.47 +0.7
1,943,481 - OH686_09520 0.47 +1.2
1,943,481 - OH686_09520 0.47 +1.2
1,943,481 - OH686_09520 0.47 -0.4
1,943,481 - OH686_09520 0.47 +0.7
1,943,481 - OH686_09520 0.47 +1.0
1,943,481 - OH686_09520 0.47 -0.0
1,943,819 + OH686_09520 0.79 -1.9
1,943,819 + OH686_09520 0.79 -0.3
1,943,819 + OH686_09520 0.79 -0.1
1,943,819 + OH686_09520 0.79 +0.2
1,943,819 + OH686_09520 0.79 +0.4
1,943,819 + OH686_09520 0.79 +1.2
1,943,819 + OH686_09520 0.79 +0.2
1,943,819 + OH686_09520 0.79 +0.1
1,943,819 + OH686_09520 0.79 +0.3
1,943,819 + OH686_09520 0.79 -0.0
1,943,820 - OH686_09520 0.79 -0.2
1,943,820 - OH686_09520 0.79 +0.8
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 -2.7
1,943,820 - OH686_09520 0.79 -0.6
1,943,820 - OH686_09520 0.79 -0.2
1,943,820 - OH686_09520 0.79 +1.0
1,943,820 - OH686_09520 0.79 +2.0
1,943,820 - OH686_09520 0.79 -0.3
1,943,820 - OH686_09520 0.79 +0.4
1,943,820 - OH686_09520 0.79 -0.2
1,943,820 - OH686_09520 0.79 +0.4
1,943,917 + OH686_09520 0.88 -0.3
1,943,917 + OH686_09520 0.88 +1.0
1,943,917 + OH686_09520 0.88 -0.8
1,943,917 + OH686_09520 0.88 +0.5
1,943,934 + +0.2
1,943,935 - +0.7
1,943,935 - +1.2
1,944,041 + +0.7
1,944,041 + -0.3
1,944,041 + +0.2
1,944,041 + +1.0
1,944,041 + -0.7
1,944,041 + +0.4
1,944,041 + +0.2
1,944,042 - +0.1
1,944,042 - -0.9
1,944,192 + OH686_09525 0.16 -0.4
1,944,192 + OH686_09525 0.16 +0.5
1,944,192 + OH686_09525 0.16 +0.2
1,944,192 + OH686_09525 0.16 -0.7
1,944,192 + OH686_09525 0.16 +0.3
1,944,192 + OH686_09525 0.16 -0.3
1,944,193 - OH686_09525 0.16 +0.8
1,944,193 - OH686_09525 0.16 -0.7
1,944,193 - OH686_09525 0.16 +0.3
1,944,255 + OH686_09525 0.24 +0.4
1,944,256 - OH686_09525 0.24 +0.4
1,944,256 - OH686_09525 0.24 -0.7
1,944,522 + OH686_09525 0.55 +1.2
1,944,522 + OH686_09525 0.55 +2.0
1,944,522 + OH686_09525 0.55 -0.2
1,944,522 + OH686_09525 0.55 +0.8
1,944,523 - OH686_09525 0.55 +1.0
1,944,523 - OH686_09525 0.55 -2.4
1,944,523 - OH686_09525 0.55 +1.5
1,944,523 - OH686_09525 0.55 +0.9
1,944,570 + OH686_09525 0.61 +0.4
1,944,570 + OH686_09525 0.61 +0.1
1,944,570 + OH686_09525 0.61 +0.4
1,944,570 + OH686_09525 0.61 +0.9
1,944,571 - OH686_09525 0.61 +0.4
1,944,628 + OH686_09525 0.67 +0.7
1,944,628 + OH686_09525 0.67 +1.0
1,944,628 + OH686_09525 0.67 +0.6
1,944,628 + OH686_09525 0.67 +0.5
1,944,628 + OH686_09525 0.67 +1.0
1,944,628 + OH686_09525 0.67 +1.1
1,944,628 + OH686_09525 0.67 +1.0
1,944,628 + OH686_09525 0.67 +0.6
1,944,629 - OH686_09525 0.68 +0.1
1,944,629 - OH686_09525 0.68 +1.0
1,944,629 - OH686_09525 0.68 +0.9
1,944,629 - OH686_09525 0.68 -0.3
1,944,629 - OH686_09525 0.68 +1.4
1,944,629 - OH686_09525 0.68 -0.3
1,944,629 - OH686_09525 0.68 -0.0
1,944,629 - OH686_09525 0.68 -0.3
1,944,661 - OH686_09525 0.71 +0.9
1,944,661 - OH686_09525 0.71 +1.6
1,944,661 - OH686_09525 0.71 -1.5
1,944,684 + OH686_09525 0.74 +1.7
1,944,684 + OH686_09525 0.74 -0.2
1,944,684 + OH686_09525 0.74 +0.3
1,944,684 + OH686_09525 0.74 +0.9
1,944,684 + OH686_09525 0.74 +2.0
1,944,684 + OH686_09525 0.74 +1.0
1,944,684 + OH686_09525 0.74 +0.3
1,944,684 + OH686_09525 0.74 +0.4
1,944,684 + OH686_09525 0.74 +0.8
1,944,684 + OH686_09525 0.74 +0.0
1,944,684 + OH686_09525 0.74 +1.2
1,944,685 - OH686_09525 0.74 -0.5
1,944,685 - OH686_09525 0.74 -0.3
1,944,685 - OH686_09525 0.74 +0.6
1,944,685 - OH686_09525 0.74 -0.3
1,944,944 + +0.3
1,944,944 + +0.4
1,944,958 + -0.1
1,944,958 + -0.5
1,944,958 + +0.6
1,944,958 + -0.6
1,944,959 - +0.5
1,944,959 - +0.3
1,944,959 - +0.2
1,944,959 - -0.0
1,944,959 - +0.9
1,944,971 + -0.3
1,944,971 + +0.8
1,944,972 - +1.1
1,944,972 - -2.7
1,944,972 - -0.6
1,944,984 + +0.6
1,944,984 + -0.1
1,944,984 + -1.0
1,944,984 + -0.7
1,944,985 - -0.2
1,944,985 - +1.8
1,944,985 - -2.1
1,944,986 + +1.3
1,944,986 + +1.2
1,944,987 - -0.3
1,944,987 - +0.8
1,944,993 + +1.2
1,944,994 - -1.9
1,944,994 - +0.2

Or see this region's nucleotide sequence