Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05580 and PS417_05585 are separated by 327 nucleotides PS417_05585 and PS417_05590 are separated by 142 nucleotides PS417_05590 and PS417_05595 overlap by 4 nucleotides
PS417_05580: PS417_05580 - glycerol uptake facilitator GlpF, at 1,256,214 to 1,257,071
_05580
PS417_05585: PS417_05585 - hypothetical protein, at 1,257,399 to 1,257,869
_05585
PS417_05590: PS417_05590 - iron ABC transporter ATP-binding protein, at 1,258,012 to 1,259,121
_05590
PS417_05595: PS417_05595 - ornithine carbamoyltransferase, at 1,259,118 to 1,260,038
_05595
Position (kb) 1258
1259
1260 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 1257.167 kb on + strand at 1257.196 kb on - strand at 1257.196 kb on - strand at 1257.201 kb on - strand at 1257.218 kb on + strand at 1257.219 kb on - strand at 1257.277 kb on - strand at 1257.323 kb on - strand at 1257.323 kb on - strand at 1257.337 kb on + strand at 1257.456 kb on + strand, within PS417_05585 at 1257.484 kb on - strand, within PS417_05585 at 1257.484 kb on - strand, within PS417_05585 at 1257.833 kb on + strand at 1257.833 kb on + strand at 1257.929 kb on + strand at 1258.009 kb on + strand at 1258.010 kb on - strand at 1258.010 kb on - strand at 1258.325 kb on + strand, within PS417_05590 at 1258.400 kb on + strand, within PS417_05590 at 1258.400 kb on + strand, within PS417_05590 at 1258.427 kb on + strand, within PS417_05590 at 1258.427 kb on + strand, within PS417_05590 at 1258.458 kb on - strand, within PS417_05590 at 1258.850 kb on + strand, within PS417_05590 at 1258.850 kb on + strand, within PS417_05590 at 1259.108 kb on - strand at 1259.132 kb on - strand at 1259.483 kb on - strand, within PS417_05595 at 1259.535 kb on + strand, within PS417_05595 at 1259.535 kb on + strand, within PS417_05595 at 1259.535 kb on + strand, within PS417_05595 at 1259.535 kb on + strand, within PS417_05595 at 1259.535 kb on + strand, within PS417_05595 at 1259.536 kb on - strand, within PS417_05595 at 1259.536 kb on - strand, within PS417_05595 at 1259.536 kb on - strand, within PS417_05595 at 1259.536 kb on - strand, within PS417_05595 at 1259.539 kb on + strand, within PS417_05595 at 1259.539 kb on + strand, within PS417_05595 at 1259.539 kb on + strand, within PS417_05595 at 1259.539 kb on + strand, within PS417_05595 at 1259.539 kb on + strand, within PS417_05595 at 1259.540 kb on - strand, within PS417_05595 at 1259.540 kb on - strand, within PS417_05595 at 1259.540 kb on - strand, within PS417_05595 at 1259.543 kb on + strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand, within PS417_05595 at 1259.544 kb on - strand at 1259.727 kb on - strand, within PS417_05595 at 1259.934 kb on + strand at 1260.042 kb on + strand at 1260.043 kb on - strand at 1260.087 kb on - strand at 1260.087 kb on - strand at 1260.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,257,167 + +0.2 1,257,196 - -1.1 1,257,196 - +0.9 1,257,201 - -0.2 1,257,218 + +0.9 1,257,219 - +0.3 1,257,277 - -0.0 1,257,323 - +0.3 1,257,323 - -0.7 1,257,337 + +0.0 1,257,456 + PS417_05585 0.12 -0.2 1,257,484 - PS417_05585 0.18 -0.2 1,257,484 - PS417_05585 0.18 +0.2 1,257,833 + -0.6 1,257,833 + +0.1 1,257,929 + +3.2 1,258,009 + -0.2 1,258,010 - -0.2 1,258,010 - -1.0 1,258,325 + PS417_05590 0.28 -0.2 1,258,400 + PS417_05590 0.35 -0.2 1,258,400 + PS417_05590 0.35 +0.3 1,258,427 + PS417_05590 0.37 +0.1 1,258,427 + PS417_05590 0.37 -0.8 1,258,458 - PS417_05590 0.40 -0.1 1,258,850 + PS417_05590 0.75 +0.5 1,258,850 + PS417_05590 0.75 -0.3 1,259,108 - +0.6 1,259,132 - -0.4 1,259,483 - PS417_05595 0.40 -3.5 1,259,535 + PS417_05595 0.45 -0.4 1,259,535 + PS417_05595 0.45 -4.7 1,259,535 + PS417_05595 0.45 -5.0 1,259,535 + PS417_05595 0.45 -1.4 1,259,535 + PS417_05595 0.45 -2.0 1,259,536 - PS417_05595 0.45 -3.9 1,259,536 - PS417_05595 0.45 -4.3 1,259,536 - PS417_05595 0.45 -4.0 1,259,536 - PS417_05595 0.45 -5.6 1,259,539 + PS417_05595 0.46 -0.5 1,259,539 + PS417_05595 0.46 -2.7 1,259,539 + PS417_05595 0.46 -3.0 1,259,539 + PS417_05595 0.46 -5.2 1,259,539 + PS417_05595 0.46 -4.9 1,259,540 - PS417_05595 0.46 -3.2 1,259,540 - PS417_05595 0.46 -1.3 1,259,540 - PS417_05595 0.46 -2.6 1,259,543 + PS417_05595 0.46 -5.7 1,259,544 - PS417_05595 0.46 -5.0 1,259,544 - PS417_05595 0.46 -1.9 1,259,544 - PS417_05595 0.46 -1.8 1,259,544 - PS417_05595 0.46 -4.9 1,259,544 - PS417_05595 0.46 -2.7 1,259,544 - PS417_05595 0.46 -4.6 1,259,544 - -0.1 1,259,727 - PS417_05595 0.66 +0.3 1,259,934 + -0.1 1,260,042 + -0.9 1,260,043 - -1.4 1,260,087 - +0.0 1,260,087 - -0.1 1,260,087 - +0.1
Or see this region's nucleotide sequence