Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3928

Experiment: m.b. Chlorite 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3927 and Echvi_3928 are separated by 290 nucleotidesEchvi_3928 and Echvi_3929 are separated by 95 nucleotidesEchvi_3929 and Echvi_3930 are separated by 85 nucleotides Echvi_3927: Echvi_3927 - Predicted nucleoside-diphosphate-sugar epimerases, at 4,702,693 to 4,703,337 _3927 Echvi_3928: Echvi_3928 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 4,703,628 to 4,704,386 _3928 Echvi_3929: Echvi_3929 - Transcriptional regulator, at 4,704,482 to 4,705,063 _3929 Echvi_3930: Echvi_3930 - Alpha-L-fucosidase, at 4,705,149 to 4,706,615 _3930 Position (kb) 4703 4704 4705Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4702.663 kb on + strandat 4702.663 kb on + strandat 4702.689 kb on + strandat 4702.690 kb on - strandat 4702.792 kb on - strand, within Echvi_3927at 4702.896 kb on + strand, within Echvi_3927at 4702.896 kb on + strand, within Echvi_3927at 4702.898 kb on + strand, within Echvi_3927at 4702.899 kb on - strand, within Echvi_3927at 4702.899 kb on - strand, within Echvi_3927at 4702.917 kb on - strand, within Echvi_3927at 4702.919 kb on - strand, within Echvi_3927at 4702.934 kb on + strand, within Echvi_3927at 4702.935 kb on - strand, within Echvi_3927at 4702.935 kb on - strand, within Echvi_3927at 4702.949 kb on + strand, within Echvi_3927at 4702.950 kb on - strand, within Echvi_3927at 4702.950 kb on - strand, within Echvi_3927at 4702.952 kb on + strand, within Echvi_3927at 4703.122 kb on - strand, within Echvi_3927at 4703.122 kb on - strand, within Echvi_3927at 4703.125 kb on + strand, within Echvi_3927at 4703.302 kb on + strandat 4703.321 kb on - strandat 4703.329 kb on + strandat 4703.329 kb on + strandat 4703.330 kb on - strandat 4703.330 kb on - strandat 4703.363 kb on - strandat 4703.403 kb on + strandat 4703.403 kb on + strandat 4703.403 kb on + strandat 4703.438 kb on + strandat 4703.439 kb on - strandat 4703.458 kb on + strandat 4703.458 kb on + strandat 4703.459 kb on - strandat 4703.461 kb on + strandat 4703.461 kb on + strandat 4703.461 kb on + strandat 4703.614 kb on + strandat 4703.615 kb on - strandat 4703.615 kb on - strandat 4703.627 kb on + strandat 4703.639 kb on - strandat 4703.762 kb on - strand, within Echvi_3928at 4703.776 kb on + strand, within Echvi_3928at 4703.972 kb on + strand, within Echvi_3928at 4703.972 kb on + strand, within Echvi_3928at 4704.042 kb on + strand, within Echvi_3928at 4704.069 kb on + strand, within Echvi_3928at 4704.069 kb on + strand, within Echvi_3928at 4704.069 kb on + strand, within Echvi_3928at 4704.069 kb on + strand, within Echvi_3928at 4704.070 kb on - strand, within Echvi_3928at 4704.070 kb on - strand, within Echvi_3928at 4704.292 kb on + strand, within Echvi_3928at 4704.340 kb on - strandat 4704.340 kb on - strandat 4704.379 kb on + strandat 4704.380 kb on - strandat 4704.384 kb on + strandat 4704.454 kb on + strandat 4704.455 kb on - strandat 4704.455 kb on - strandat 4704.473 kb on + strandat 4704.474 kb on - strandat 4704.477 kb on - strandat 4704.494 kb on - strandat 4704.494 kb on - strandat 4704.554 kb on + strand, within Echvi_3929at 4704.557 kb on + strand, within Echvi_3929at 4704.558 kb on - strand, within Echvi_3929at 4704.568 kb on + strand, within Echvi_3929at 4704.568 kb on + strand, within Echvi_3929at 4704.569 kb on - strand, within Echvi_3929at 4704.615 kb on - strand, within Echvi_3929at 4704.615 kb on - strand, within Echvi_3929at 4704.666 kb on - strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.667 kb on + strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.668 kb on - strand, within Echvi_3929at 4704.893 kb on + strand, within Echvi_3929at 4704.897 kb on + strand, within Echvi_3929at 4704.901 kb on + strand, within Echvi_3929at 4704.901 kb on + strand, within Echvi_3929at 4704.974 kb on + strand, within Echvi_3929at 4704.975 kb on - strand, within Echvi_3929at 4704.976 kb on + strand, within Echvi_3929at 4704.976 kb on + strand, within Echvi_3929at 4704.985 kb on - strand, within Echvi_3929at 4705.035 kb on + strandat 4705.036 kb on - strandat 4705.083 kb on + strandat 4705.084 kb on - strandat 4705.087 kb on + strandat 4705.088 kb on - strandat 4705.088 kb on - strandat 4705.090 kb on + strandat 4705.090 kb on + strandat 4705.091 kb on - strandat 4705.113 kb on - strandat 4705.135 kb on - strandat 4705.156 kb on - strandat 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.359 kb on + strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930at 4705.360 kb on - strand, within Echvi_3930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.3 mM
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4,702,663 + -0.4
4,702,663 + -0.6
4,702,689 + -0.7
4,702,690 - -0.4
4,702,792 - Echvi_3927 0.15 -0.1
4,702,896 + Echvi_3927 0.31 -0.4
4,702,896 + Echvi_3927 0.31 -1.2
4,702,898 + Echvi_3927 0.32 +0.2
4,702,899 - Echvi_3927 0.32 +0.1
4,702,899 - Echvi_3927 0.32 -2.8
4,702,917 - Echvi_3927 0.35 -0.5
4,702,919 - Echvi_3927 0.35 -1.3
4,702,934 + Echvi_3927 0.37 -0.1
4,702,935 - Echvi_3927 0.38 -0.3
4,702,935 - Echvi_3927 0.38 +0.4
4,702,949 + Echvi_3927 0.40 -0.3
4,702,950 - Echvi_3927 0.40 +0.4
4,702,950 - Echvi_3927 0.40 -2.3
4,702,952 + Echvi_3927 0.40 +0.1
4,703,122 - Echvi_3927 0.67 +0.6
4,703,122 - Echvi_3927 0.67 -0.2
4,703,125 + Echvi_3927 0.67 +0.2
4,703,302 + -0.7
4,703,321 - -0.7
4,703,329 + -0.3
4,703,329 + -1.2
4,703,330 - +0.1
4,703,330 - +1.3
4,703,363 - -0.4
4,703,403 + +0.6
4,703,403 + +0.3
4,703,403 + +0.6
4,703,438 + +1.1
4,703,439 - +0.3
4,703,458 + +0.4
4,703,458 + -0.3
4,703,459 - +1.8
4,703,461 + -0.8
4,703,461 + +0.0
4,703,461 + +0.0
4,703,614 + +0.1
4,703,615 - +0.4
4,703,615 - -1.9
4,703,627 + -0.1
4,703,639 - +1.0
4,703,762 - Echvi_3928 0.18 +0.1
4,703,776 + Echvi_3928 0.19 +1.4
4,703,972 + Echvi_3928 0.45 +0.3
4,703,972 + Echvi_3928 0.45 -0.4
4,704,042 + Echvi_3928 0.55 -0.8
4,704,069 + Echvi_3928 0.58 -0.8
4,704,069 + Echvi_3928 0.58 -1.0
4,704,069 + Echvi_3928 0.58 -0.3
4,704,069 + Echvi_3928 0.58 +0.3
4,704,070 - Echvi_3928 0.58 -0.6
4,704,070 - Echvi_3928 0.58 +0.1
4,704,292 + Echvi_3928 0.87 +1.4
4,704,340 - -0.7
4,704,340 - -0.3
4,704,379 + -0.4
4,704,380 - -0.3
4,704,384 + +0.8
4,704,454 + +0.6
4,704,455 - +1.2
4,704,455 - -1.1
4,704,473 + -2.6
4,704,474 - -2.6
4,704,477 - -0.2
4,704,494 - +0.1
4,704,494 - +0.0
4,704,554 + Echvi_3929 0.12 -0.6
4,704,557 + Echvi_3929 0.13 +0.0
4,704,558 - Echvi_3929 0.13 -0.2
4,704,568 + Echvi_3929 0.15 -0.3
4,704,568 + Echvi_3929 0.15 -1.1
4,704,569 - Echvi_3929 0.15 +0.4
4,704,615 - Echvi_3929 0.23 +1.2
4,704,615 - Echvi_3929 0.23 +0.1
4,704,666 - Echvi_3929 0.32 +1.0
4,704,667 + Echvi_3929 0.32 -1.4
4,704,667 + Echvi_3929 0.32 -0.4
4,704,667 + Echvi_3929 0.32 -1.2
4,704,667 + Echvi_3929 0.32 -0.4
4,704,667 + Echvi_3929 0.32 -0.1
4,704,667 + Echvi_3929 0.32 -0.7
4,704,667 + Echvi_3929 0.32 -0.2
4,704,668 - Echvi_3929 0.32 -0.1
4,704,668 - Echvi_3929 0.32 +0.4
4,704,668 - Echvi_3929 0.32 -0.9
4,704,668 - Echvi_3929 0.32 -1.4
4,704,668 - Echvi_3929 0.32 -0.4
4,704,893 + Echvi_3929 0.71 +1.9
4,704,897 + Echvi_3929 0.71 +0.1
4,704,901 + Echvi_3929 0.72 -1.1
4,704,901 + Echvi_3929 0.72 +0.4
4,704,974 + Echvi_3929 0.85 +0.6
4,704,975 - Echvi_3929 0.85 -0.6
4,704,976 + Echvi_3929 0.85 +1.9
4,704,976 + Echvi_3929 0.85 +0.4
4,704,985 - Echvi_3929 0.86 -1.6
4,705,035 + +0.4
4,705,036 - +0.2
4,705,083 + +0.2
4,705,084 - +1.4
4,705,087 + +0.3
4,705,088 - +0.1
4,705,088 - +0.8
4,705,090 + -2.3
4,705,090 + +0.1
4,705,091 - -1.2
4,705,113 - -0.4
4,705,135 - -0.1
4,705,156 - -0.6
4,705,359 + Echvi_3930 0.14 +0.0
4,705,359 + Echvi_3930 0.14 +0.4
4,705,359 + Echvi_3930 0.14 +0.0
4,705,359 + Echvi_3930 0.14 +0.5
4,705,359 + Echvi_3930 0.14 +0.3
4,705,359 + Echvi_3930 0.14 +0.8
4,705,359 + Echvi_3930 0.14 -0.3
4,705,359 + Echvi_3930 0.14 -0.6
4,705,359 + Echvi_3930 0.14 -0.0
4,705,360 - Echvi_3930 0.14 +1.4
4,705,360 - Echvi_3930 0.14 -0.4
4,705,360 - Echvi_3930 0.14 +1.7
4,705,360 - Echvi_3930 0.14 -1.1
4,705,360 - Echvi_3930 0.14 +0.2
4,705,360 - Echvi_3930 0.14 +0.3
4,705,360 - Echvi_3930 0.14 -1.9
4,705,360 - Echvi_3930 0.14 -1.8
4,705,360 - Echvi_3930 0.14 +0.0

Or see this region's nucleotide sequence