Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3095

Experiment: m.b. Chlorite 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3093 and Echvi_3094 overlap by 4 nucleotidesEchvi_3094 and Echvi_3095 are separated by 160 nucleotides Echvi_3093: Echvi_3093 - hypothetical protein, at 3,694,934 to 3,695,632 _3093 Echvi_3094: Echvi_3094 - Protein of unknown function (DUF3307)., at 3,695,629 to 3,696,333 _3094 Echvi_3095: Echvi_3095 - Arylsulfatase A and related enzymes, at 3,696,494 to 3,698,104 _3095 Position (kb) 3696 3697 3698 3699Strain fitness (log2 ratio) -2 -1 0 1 2at 3695.609 kb on - strandat 3695.671 kb on - strandat 3695.748 kb on - strand, within Echvi_3094at 3695.758 kb on - strand, within Echvi_3094at 3695.759 kb on + strand, within Echvi_3094at 3695.804 kb on - strand, within Echvi_3094at 3695.810 kb on + strand, within Echvi_3094at 3695.810 kb on + strand, within Echvi_3094at 3695.812 kb on + strand, within Echvi_3094at 3695.812 kb on + strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.813 kb on - strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.842 kb on + strand, within Echvi_3094at 3695.843 kb on - strand, within Echvi_3094at 3695.843 kb on - strand, within Echvi_3094at 3695.871 kb on - strand, within Echvi_3094at 3695.871 kb on - strand, within Echvi_3094at 3695.939 kb on + strand, within Echvi_3094at 3695.939 kb on + strand, within Echvi_3094at 3695.940 kb on - strand, within Echvi_3094at 3695.965 kb on + strand, within Echvi_3094at 3696.032 kb on - strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.033 kb on + strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.034 kb on - strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.038 kb on + strand, within Echvi_3094at 3696.227 kb on + strand, within Echvi_3094at 3696.276 kb on + strandat 3696.277 kb on - strandat 3696.285 kb on + strandat 3696.285 kb on + strandat 3696.321 kb on - strandat 3696.321 kb on - strandat 3696.330 kb on - strandat 3696.357 kb on - strandat 3696.357 kb on - strandat 3696.357 kb on - strandat 3696.409 kb on + strandat 3696.410 kb on - strandat 3696.437 kb on - strandat 3696.437 kb on - strandat 3696.438 kb on + strandat 3696.441 kb on + strandat 3696.479 kb on + strandat 3696.480 kb on - strandat 3696.488 kb on + strandat 3696.488 kb on + strandat 3696.489 kb on - strandat 3696.498 kb on - strandat 3696.498 kb on - strandat 3696.549 kb on + strandat 3696.581 kb on - strandat 3696.626 kb on - strandat 3696.637 kb on + strandat 3696.637 kb on + strandat 3696.657 kb on - strand, within Echvi_3095at 3696.668 kb on - strand, within Echvi_3095at 3696.700 kb on + strand, within Echvi_3095at 3696.701 kb on - strand, within Echvi_3095at 3696.755 kb on - strand, within Echvi_3095at 3696.796 kb on + strand, within Echvi_3095at 3696.796 kb on + strand, within Echvi_3095at 3696.796 kb on + strand, within Echvi_3095at 3696.797 kb on - strand, within Echvi_3095at 3696.809 kb on - strand, within Echvi_3095at 3696.809 kb on - strand, within Echvi_3095at 3696.823 kb on - strand, within Echvi_3095at 3696.847 kb on + strand, within Echvi_3095at 3696.847 kb on + strand, within Echvi_3095at 3696.871 kb on - strand, within Echvi_3095at 3696.944 kb on + strand, within Echvi_3095at 3696.975 kb on - strand, within Echvi_3095at 3696.977 kb on + strand, within Echvi_3095at 3696.977 kb on + strand, within Echvi_3095at 3696.978 kb on - strand, within Echvi_3095at 3696.978 kb on - strand, within Echvi_3095at 3696.978 kb on - strand, within Echvi_3095at 3697.026 kb on - strand, within Echvi_3095at 3697.087 kb on + strand, within Echvi_3095at 3697.088 kb on - strand, within Echvi_3095at 3697.096 kb on + strand, within Echvi_3095at 3697.096 kb on + strand, within Echvi_3095at 3697.097 kb on - strand, within Echvi_3095at 3697.106 kb on + strand, within Echvi_3095at 3697.107 kb on - strand, within Echvi_3095at 3697.107 kb on - strand, within Echvi_3095at 3697.165 kb on + strand, within Echvi_3095at 3697.166 kb on - strand, within Echvi_3095at 3697.197 kb on + strand, within Echvi_3095at 3697.208 kb on + strand, within Echvi_3095at 3697.209 kb on - strand, within Echvi_3095at 3697.210 kb on + strand, within Echvi_3095at 3697.283 kb on - strand, within Echvi_3095at 3697.283 kb on - strand, within Echvi_3095at 3697.287 kb on + strand, within Echvi_3095at 3697.349 kb on + strand, within Echvi_3095at 3697.350 kb on - strand, within Echvi_3095at 3697.354 kb on + strand, within Echvi_3095at 3697.354 kb on + strand, within Echvi_3095at 3697.404 kb on + strand, within Echvi_3095at 3697.405 kb on - strand, within Echvi_3095at 3697.405 kb on - strand, within Echvi_3095at 3697.405 kb on - strand, within Echvi_3095at 3697.407 kb on - strand, within Echvi_3095at 3697.407 kb on - strand, within Echvi_3095at 3697.418 kb on - strand, within Echvi_3095at 3697.472 kb on + strand, within Echvi_3095at 3697.473 kb on - strand, within Echvi_3095at 3697.481 kb on + strand, within Echvi_3095at 3697.481 kb on + strand, within Echvi_3095at 3697.482 kb on - strand, within Echvi_3095at 3697.483 kb on + strand, within Echvi_3095at 3697.484 kb on - strand, within Echvi_3095at 3697.493 kb on + strand, within Echvi_3095at 3697.494 kb on - strand, within Echvi_3095at 3697.544 kb on + strand, within Echvi_3095at 3697.544 kb on + strand, within Echvi_3095at 3697.587 kb on - strand, within Echvi_3095at 3697.588 kb on + strand, within Echvi_3095at 3697.588 kb on + strandat 3697.589 kb on - strand, within Echvi_3095at 3697.589 kb on - strand, within Echvi_3095at 3697.642 kb on + strand, within Echvi_3095at 3697.643 kb on - strand, within Echvi_3095at 3697.643 kb on - strand, within Echvi_3095at 3697.643 kb on - strand, within Echvi_3095at 3697.646 kb on + strand, within Echvi_3095at 3697.647 kb on - strand, within Echvi_3095at 3697.715 kb on - strand, within Echvi_3095at 3697.850 kb on + strand, within Echvi_3095at 3697.854 kb on - strand, within Echvi_3095at 3697.854 kb on - strand, within Echvi_3095at 3697.859 kb on + strand, within Echvi_3095at 3697.859 kb on + strand, within Echvi_3095at 3697.859 kb on + strand, within Echvi_3095at 3697.860 kb on - strand, within Echvi_3095at 3697.860 kb on - strand, within Echvi_3095at 3697.863 kb on - strand, within Echvi_3095at 3697.941 kb on - strand, within Echvi_3095at 3697.964 kb on + strandat 3697.965 kb on - strandat 3698.028 kb on + strandat 3698.028 kb on + strandat 3698.073 kb on - strandat 3698.121 kb on + strandat 3698.121 kb on + strandat 3698.217 kb on - strandat 3699.010 kb on - strandat 3699.012 kb on - strandat 3699.012 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.3 mM
remove
3,695,609 - -0.9
3,695,671 - -0.3
3,695,748 - Echvi_3094 0.17 +0.9
3,695,758 - Echvi_3094 0.18 +0.3
3,695,759 + Echvi_3094 0.18 -0.1
3,695,804 - Echvi_3094 0.25 +0.7
3,695,810 + Echvi_3094 0.26 +0.4
3,695,810 + Echvi_3094 0.26 -1.6
3,695,812 + Echvi_3094 0.26 +0.0
3,695,812 + Echvi_3094 0.26 -0.4
3,695,813 - Echvi_3094 0.26 +0.5
3,695,813 - Echvi_3094 0.26 +0.6
3,695,813 - Echvi_3094 0.26 +0.4
3,695,813 - Echvi_3094 0.26 -0.5
3,695,842 + Echvi_3094 0.30 -1.0
3,695,842 + Echvi_3094 0.30 -0.0
3,695,842 + Echvi_3094 0.30 +0.7
3,695,843 - Echvi_3094 0.30 -1.0
3,695,843 - Echvi_3094 0.30 -0.2
3,695,871 - Echvi_3094 0.34 -0.2
3,695,871 - Echvi_3094 0.34 +0.4
3,695,939 + Echvi_3094 0.44 -0.2
3,695,939 + Echvi_3094 0.44 +0.3
3,695,940 - Echvi_3094 0.44 +2.2
3,695,965 + Echvi_3094 0.48 -0.2
3,696,032 - Echvi_3094 0.57 +0.0
3,696,033 + Echvi_3094 0.57 +0.2
3,696,033 + Echvi_3094 0.57 -0.1
3,696,033 + Echvi_3094 0.57 -1.0
3,696,033 + Echvi_3094 0.57 -1.1
3,696,034 - Echvi_3094 0.57 -0.6
3,696,034 - Echvi_3094 0.57 +0.2
3,696,034 - Echvi_3094 0.57 +0.9
3,696,034 - Echvi_3094 0.57 -2.2
3,696,034 - Echvi_3094 0.57 -1.1
3,696,038 + Echvi_3094 0.58 +1.2
3,696,038 + Echvi_3094 0.58 +0.7
3,696,038 + Echvi_3094 0.58 +0.3
3,696,227 + Echvi_3094 0.85 -0.6
3,696,276 + +0.4
3,696,277 - +0.6
3,696,285 + -0.4
3,696,285 + -0.5
3,696,321 - +0.4
3,696,321 - -0.3
3,696,330 - +0.9
3,696,357 - +0.1
3,696,357 - +0.6
3,696,357 - +0.3
3,696,409 + -0.1
3,696,410 - -2.7
3,696,437 - -0.7
3,696,437 - +0.1
3,696,438 + -0.0
3,696,441 + +0.2
3,696,479 + -0.5
3,696,480 - -0.9
3,696,488 + -0.3
3,696,488 + -0.6
3,696,489 - -0.1
3,696,498 - +0.9
3,696,498 - +0.5
3,696,549 + +0.9
3,696,581 - +0.1
3,696,626 - -0.5
3,696,637 + +1.0
3,696,637 + -0.7
3,696,657 - Echvi_3095 0.10 -0.4
3,696,668 - Echvi_3095 0.11 -0.5
3,696,700 + Echvi_3095 0.13 +0.7
3,696,701 - Echvi_3095 0.13 +0.1
3,696,755 - Echvi_3095 0.16 +0.4
3,696,796 + Echvi_3095 0.19 +0.1
3,696,796 + Echvi_3095 0.19 -0.4
3,696,796 + Echvi_3095 0.19 +0.5
3,696,797 - Echvi_3095 0.19 -1.3
3,696,809 - Echvi_3095 0.20 -1.1
3,696,809 - Echvi_3095 0.20 +0.3
3,696,823 - Echvi_3095 0.20 -1.5
3,696,847 + Echvi_3095 0.22 -0.9
3,696,847 + Echvi_3095 0.22 +0.4
3,696,871 - Echvi_3095 0.23 -0.2
3,696,944 + Echvi_3095 0.28 -0.1
3,696,975 - Echvi_3095 0.30 -1.4
3,696,977 + Echvi_3095 0.30 +0.0
3,696,977 + Echvi_3095 0.30 +0.3
3,696,978 - Echvi_3095 0.30 +0.9
3,696,978 - Echvi_3095 0.30 +0.3
3,696,978 - Echvi_3095 0.30 -0.8
3,697,026 - Echvi_3095 0.33 -0.4
3,697,087 + Echvi_3095 0.37 +0.1
3,697,088 - Echvi_3095 0.37 +0.6
3,697,096 + Echvi_3095 0.37 -0.6
3,697,096 + Echvi_3095 0.37 +0.6
3,697,097 - Echvi_3095 0.37 +0.5
3,697,106 + Echvi_3095 0.38 -0.1
3,697,107 - Echvi_3095 0.38 -0.2
3,697,107 - Echvi_3095 0.38 +0.3
3,697,165 + Echvi_3095 0.42 +0.0
3,697,166 - Echvi_3095 0.42 +0.2
3,697,197 + Echvi_3095 0.44 -0.8
3,697,208 + Echvi_3095 0.44 +0.6
3,697,209 - Echvi_3095 0.44 -0.1
3,697,210 + Echvi_3095 0.44 +0.6
3,697,283 - Echvi_3095 0.49 +0.4
3,697,283 - Echvi_3095 0.49 +1.4
3,697,287 + Echvi_3095 0.49 -0.8
3,697,349 + Echvi_3095 0.53 +0.7
3,697,350 - Echvi_3095 0.53 +1.1
3,697,354 + Echvi_3095 0.53 +0.5
3,697,354 + Echvi_3095 0.53 -1.0
3,697,404 + Echvi_3095 0.56 +0.1
3,697,405 - Echvi_3095 0.57 -0.5
3,697,405 - Echvi_3095 0.57 +1.2
3,697,405 - Echvi_3095 0.57 +1.4
3,697,407 - Echvi_3095 0.57 +0.5
3,697,407 - Echvi_3095 0.57 -1.0
3,697,418 - Echvi_3095 0.57 -0.6
3,697,472 + Echvi_3095 0.61 +0.7
3,697,473 - Echvi_3095 0.61 -0.2
3,697,481 + Echvi_3095 0.61 +0.0
3,697,481 + Echvi_3095 0.61 -0.6
3,697,482 - Echvi_3095 0.61 +0.7
3,697,483 + Echvi_3095 0.61 -0.6
3,697,484 - Echvi_3095 0.61 -1.4
3,697,493 + Echvi_3095 0.62 +0.0
3,697,494 - Echvi_3095 0.62 -0.6
3,697,544 + Echvi_3095 0.65 +0.8
3,697,544 + Echvi_3095 0.65 +0.8
3,697,587 - Echvi_3095 0.68 +0.1
3,697,588 + Echvi_3095 0.68 +0.8
3,697,588 + +1.8
3,697,589 - Echvi_3095 0.68 -0.4
3,697,589 - Echvi_3095 0.68 -0.2
3,697,642 + Echvi_3095 0.71 -0.3
3,697,643 - Echvi_3095 0.71 +0.2
3,697,643 - Echvi_3095 0.71 -0.3
3,697,643 - Echvi_3095 0.71 +0.1
3,697,646 + Echvi_3095 0.72 -0.2
3,697,647 - Echvi_3095 0.72 -0.6
3,697,715 - Echvi_3095 0.76 +0.4
3,697,850 + Echvi_3095 0.84 +0.0
3,697,854 - Echvi_3095 0.84 +0.6
3,697,854 - Echvi_3095 0.84 +0.3
3,697,859 + Echvi_3095 0.85 +0.5
3,697,859 + Echvi_3095 0.85 -0.3
3,697,859 + Echvi_3095 0.85 -1.5
3,697,860 - Echvi_3095 0.85 -1.0
3,697,860 - Echvi_3095 0.85 -0.8
3,697,863 - Echvi_3095 0.85 +0.3
3,697,941 - Echvi_3095 0.90 -0.1
3,697,964 + +1.0
3,697,965 - +0.1
3,698,028 + -1.2
3,698,028 + -0.1
3,698,073 - +0.2
3,698,121 + +0.1
3,698,121 + +0.4
3,698,217 - +1.0
3,699,010 - -1.0
3,699,012 - -0.1
3,699,012 - +0.9

Or see this region's nucleotide sequence