Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4378 and EX28DRAFT_4379 are separated by 955 nucleotides EX28DRAFT_4379 and EX28DRAFT_4380 are separated by 114 nucleotides EX28DRAFT_4380 and EX28DRAFT_4381 are separated by 39 nucleotides EX28DRAFT_4381 and EX28DRAFT_4382 overlap by 1 nucleotides
EX28DRAFT_4377: EX28DRAFT_4377 - formate dehydrogenase (quinone-dependent) catalytic subunit, at 41,161 to 44,211
_4377
EX28DRAFT_4378: EX28DRAFT_4378 - RNA, at 43,571 to 43,629
_4378
EX28DRAFT_4379: EX28DRAFT_4379 - formate dehydrogenase family accessory protein FdhD, at 44,585 to 45,421
_4379
EX28DRAFT_4380: EX28DRAFT_4380 - Protein of unknown function (DUF1471), at 45,536 to 45,748
_4380
EX28DRAFT_4381: EX28DRAFT_4381 - Branched-chain amino acid transport protein (AzlD), at 45,788 to 46,111
_4381
EX28DRAFT_4382: EX28DRAFT_4382 - Predicted branched-chain amino acid permease (azaleucine resistance), at 46,111 to 46,770
_4382
Position (kb)
44
45
46 Strain fitness (log2 ratio)
-1
0
1
2 at 43.800 kb on + strand, within EX28DRAFT_4377 at 43.800 kb on + strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.990 kb on - strand at 44.007 kb on + strand at 44.026 kb on - strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.058 kb on - strand at 44.062 kb on - strand at 44.067 kb on + strand at 44.067 kb on + strand at 44.067 kb on + strand at 44.068 kb on - strand at 44.071 kb on - strand at 44.097 kb on + strand at 44.097 kb on + strand at 44.097 kb on + strand at 44.099 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.246 kb on + strand at 44.246 kb on + strand at 44.247 kb on - strand at 44.247 kb on - strand at 44.252 kb on + strand at 44.357 kb on - strand at 44.381 kb on + strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.449 kb on + strand at 44.466 kb on + strand at 44.467 kb on - strand at 44.483 kb on + strand at 44.487 kb on + strand at 44.514 kb on + strand at 44.515 kb on - strand at 44.515 kb on - strand at 44.517 kb on + strand at 44.518 kb on - strand at 44.518 kb on - strand at 44.523 kb on + strand at 44.523 kb on + strand at 44.547 kb on + strand at 44.635 kb on - strand at 44.828 kb on + strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379 at 45.245 kb on + strand, within EX28DRAFT_4379 at 45.246 kb on - strand, within EX28DRAFT_4379 at 45.386 kb on + strand at 45.386 kb on + strand at 45.386 kb on + strand at 45.386 kb on + strand at 45.455 kb on - strand at 45.475 kb on - strand at 45.477 kb on + strand at 45.477 kb on + strand at 45.477 kb on + strand at 45.646 kb on + strand, within EX28DRAFT_4380 at 45.742 kb on + strand at 45.794 kb on + strand at 45.795 kb on - strand at 45.821 kb on + strand, within EX28DRAFT_4381 at 45.852 kb on - strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.056 kb on + strand, within EX28DRAFT_4381 at 46.057 kb on - strand, within EX28DRAFT_4381 at 46.276 kb on + strand, within EX28DRAFT_4382 at 46.378 kb on + strand, within EX28DRAFT_4382 at 46.379 kb on - strand, within EX28DRAFT_4382 at 46.379 kb on - strand, within EX28DRAFT_4382
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 43,800 + EX28DRAFT_4377 0.86 -0.3 43,800 + EX28DRAFT_4377 0.86 -0.1 43,804 - EX28DRAFT_4377 0.87 -0.6 43,804 - EX28DRAFT_4377 0.87 +0.4 43,804 - EX28DRAFT_4377 0.87 +0.2 43,990 - -0.4 44,007 + -0.0 44,026 - -1.2 44,027 + -0.9 44,027 + +0.2 44,027 + +0.3 44,027 + +0.5 44,028 - -0.5 44,028 - -0.1 44,028 - -0.3 44,028 - +0.5 44,028 - +0.3 44,028 - -0.4 44,028 - -1.1 44,028 - +0.1 44,058 - +0.3 44,062 - +0.4 44,067 + -0.4 44,067 + -0.5 44,067 + +0.4 44,068 - +0.1 44,071 - +0.3 44,097 + -0.3 44,097 + +0.1 44,097 + +0.0 44,099 + -0.1 44,238 + -0.3 44,238 + +0.7 44,238 + -0.2 44,238 + -0.3 44,238 + +0.1 44,238 + -0.1 44,238 + +0.5 44,238 + -0.2 44,239 - +0.1 44,239 - +0.2 44,239 - +0.1 44,239 - -0.1 44,242 + -0.5 44,242 + -0.7 44,242 + -0.3 44,242 + -0.7 44,242 + -0.0 44,243 - +1.0 44,243 - +0.0 44,243 - -0.0 44,243 - +0.1 44,243 - +1.6 44,243 - +0.3 44,243 - -0.1 44,243 - -0.3 44,243 - -0.0 44,243 - +0.2 44,246 + -0.4 44,246 + -1.2 44,247 - -0.5 44,247 - +0.2 44,252 + -1.0 44,357 - +1.2 44,381 + +1.9 44,382 - +0.4 44,382 - -0.7 44,382 - -0.1 44,382 - -1.1 44,449 + +0.8 44,466 + -0.5 44,467 - -0.7 44,483 + -0.1 44,487 + -0.6 44,514 + -0.4 44,515 - -0.7 44,515 - +0.4 44,517 + +0.3 44,518 - -0.7 44,518 - -0.6 44,523 + +0.4 44,523 + +0.1 44,547 + +0.5 44,635 - -1.5 44,828 + EX28DRAFT_4379 0.29 -0.5 44,829 - EX28DRAFT_4379 0.29 -0.6 44,829 - EX28DRAFT_4379 0.29 -0.0 45,060 + EX28DRAFT_4379 0.57 -1.1 45,060 + EX28DRAFT_4379 0.57 -0.1 45,245 + EX28DRAFT_4379 0.79 -0.1 45,246 - EX28DRAFT_4379 0.79 -0.1 45,386 + -0.8 45,386 + -0.2 45,386 + +0.3 45,386 + -0.4 45,455 - +0.4 45,475 - +0.3 45,477 + -0.0 45,477 + +0.1 45,477 + -0.3 45,646 + EX28DRAFT_4380 0.52 +0.3 45,742 + -1.6 45,794 + +0.1 45,795 - +0.0 45,821 + EX28DRAFT_4381 0.10 +0.0 45,852 - EX28DRAFT_4381 0.20 +0.3 46,056 + EX28DRAFT_4381 0.83 -0.5 46,056 + EX28DRAFT_4381 0.83 +0.7 46,056 + EX28DRAFT_4381 0.83 -1.0 46,056 + EX28DRAFT_4381 0.83 -0.1 46,057 - EX28DRAFT_4381 0.83 +0.3 46,276 + EX28DRAFT_4382 0.25 +0.3 46,378 + EX28DRAFT_4382 0.40 +0.7 46,379 - EX28DRAFT_4382 0.41 -0.2 46,379 - EX28DRAFT_4382 0.41 +0.3
Or see this region's nucleotide sequence