Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4208 and EX28DRAFT_4209 are separated by 9 nucleotides EX28DRAFT_4209 and EX28DRAFT_4210 overlap by 4 nucleotides EX28DRAFT_4210 and EX28DRAFT_4211 overlap by 1 nucleotides EX28DRAFT_4211 and EX28DRAFT_4212 overlap by 8 nucleotides EX28DRAFT_4212 and EX28DRAFT_4213 are separated by 9 nucleotides
EX28DRAFT_4208: EX28DRAFT_4208 - phosphonate C-P lyase system protein PhnK, at 15,555 to 16,310
_4208
EX28DRAFT_4209: EX28DRAFT_4209 - phosphonate C-P lyase system protein PhnL, at 16,320 to 17,000
_4209
EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133
_4210
EX28DRAFT_4211: EX28DRAFT_4211 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 18,133 to 18,681
_4211
EX28DRAFT_4212: EX28DRAFT_4212 - Acetyltransferase (GNAT) family, at 18,674 to 19,108
_4212
EX28DRAFT_4213: EX28DRAFT_4213 - phosphonate metabolism protein PhnP, at 19,118 to 19,876
_4213
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 16.055 kb on + strand, within EX28DRAFT_4208 at 16.309 kb on - strand at 16.309 kb on - strand at 16.331 kb on - strand at 16.331 kb on - strand at 16.339 kb on + strand at 16.340 kb on - strand at 16.340 kb on - strand at 16.343 kb on + strand at 16.344 kb on - strand at 16.344 kb on - strand at 16.394 kb on + strand, within EX28DRAFT_4209 at 16.395 kb on - strand, within EX28DRAFT_4209 at 16.491 kb on + strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.492 kb on - strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.565 kb on + strand, within EX28DRAFT_4209 at 16.566 kb on - strand, within EX28DRAFT_4209 at 16.831 kb on + strand, within EX28DRAFT_4209 at 16.951 kb on + strand at 17.101 kb on + strand at 17.529 kb on - strand, within EX28DRAFT_4210 at 17.529 kb on - strand, within EX28DRAFT_4210 at 17.538 kb on - strand, within EX28DRAFT_4210 at 17.552 kb on + strand, within EX28DRAFT_4210 at 17.627 kb on - strand, within EX28DRAFT_4210 at 17.706 kb on + strand, within EX28DRAFT_4210 at 17.962 kb on + strand, within EX28DRAFT_4210 at 17.962 kb on + strand, within EX28DRAFT_4210 at 18.013 kb on + strand, within EX28DRAFT_4210 at 18.238 kb on + strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.242 kb on + strand, within EX28DRAFT_4211 at 18.356 kb on - strand, within EX28DRAFT_4211 at 18.455 kb on - strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.636 kb on + strand at 18.726 kb on - strand, within EX28DRAFT_4212 at 19.071 kb on - strand at 19.106 kb on + strand at 19.118 kb on - strand at 19.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 16,055 + EX28DRAFT_4208 0.66 +0.3 16,309 - -0.3 16,309 - -0.0 16,331 - -0.0 16,331 - +0.8 16,339 + -0.0 16,340 - +0.3 16,340 - +0.4 16,343 + -0.6 16,344 - -0.1 16,344 - +0.0 16,394 + EX28DRAFT_4209 0.11 -0.4 16,395 - EX28DRAFT_4209 0.11 +0.3 16,491 + EX28DRAFT_4209 0.25 +0.3 16,492 - EX28DRAFT_4209 0.25 -0.4 16,492 - EX28DRAFT_4209 0.25 +0.2 16,565 + EX28DRAFT_4209 0.36 -0.5 16,565 + EX28DRAFT_4209 0.36 +0.4 16,565 + EX28DRAFT_4209 0.36 +0.3 16,565 + EX28DRAFT_4209 0.36 -0.1 16,566 - EX28DRAFT_4209 0.36 +0.5 16,831 + EX28DRAFT_4209 0.75 -0.0 16,951 + +1.2 17,101 + +0.7 17,529 - EX28DRAFT_4210 0.47 +0.0 17,529 - EX28DRAFT_4210 0.47 -0.0 17,538 - EX28DRAFT_4210 0.48 +0.2 17,552 + EX28DRAFT_4210 0.49 -3.5 17,627 - EX28DRAFT_4210 0.55 +0.2 17,706 + EX28DRAFT_4210 0.62 -0.1 17,962 + EX28DRAFT_4210 0.85 +0.2 17,962 + EX28DRAFT_4210 0.85 +0.1 18,013 + EX28DRAFT_4210 0.89 -0.3 18,238 + EX28DRAFT_4211 0.19 +0.1 18,239 - EX28DRAFT_4211 0.19 -0.1 18,239 - EX28DRAFT_4211 0.19 -0.2 18,242 + EX28DRAFT_4211 0.20 -0.1 18,356 - EX28DRAFT_4211 0.41 +0.5 18,455 - EX28DRAFT_4211 0.59 +0.0 18,623 + EX28DRAFT_4211 0.89 +0.2 18,623 + EX28DRAFT_4211 0.89 -0.3 18,636 + +0.5 18,726 - EX28DRAFT_4212 0.12 +0.3 19,071 - +0.6 19,106 + -0.3 19,118 - +1.2 19,118 - +0.2
Or see this region's nucleotide sequence