Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4044

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4042 and EX28DRAFT_4043 are separated by 11 nucleotidesEX28DRAFT_4043 and EX28DRAFT_4044 overlap by 4 nucleotidesEX28DRAFT_4044 and EX28DRAFT_4045 are separated by 46 nucleotides EX28DRAFT_4042: EX28DRAFT_4042 - Protein of unknown function (DUF2629), at 7,060 to 7,248 _4042 EX28DRAFT_4043: EX28DRAFT_4043 - cellulose synthase operon protein YhjQ, at 7,260 to 8,012 _4043 EX28DRAFT_4044: EX28DRAFT_4044 - cellulose synthase catalytic subunit (UDP-forming), at 8,009 to 10,624 _4044 EX28DRAFT_4045: EX28DRAFT_4045 - Bacterial cellulose synthase subunit, at 10,671 to 13,055 _4045 Position (kb) 8 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 7.065 kb on + strandat 7.166 kb on - strand, within EX28DRAFT_4042at 7.246 kb on + strandat 7.246 kb on + strandat 7.345 kb on + strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.454 kb on + strand, within EX28DRAFT_4043at 7.483 kb on - strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.612 kb on - strand, within EX28DRAFT_4043at 7.685 kb on + strand, within EX28DRAFT_4043at 7.687 kb on + strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 8.008 kb on + strandat 8.008 kb on + strandat 8.008 kb on + strandat 8.009 kb on - strandat 8.182 kb on - strandat 8.182 kb on - strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.216 kb on - strandat 8.252 kb on + strandat 8.388 kb on + strand, within EX28DRAFT_4044at 8.507 kb on - strand, within EX28DRAFT_4044at 8.509 kb on + strand, within EX28DRAFT_4044at 8.509 kb on + strand, within EX28DRAFT_4044at 8.619 kb on + strand, within EX28DRAFT_4044at 8.646 kb on - strand, within EX28DRAFT_4044at 8.660 kb on + strand, within EX28DRAFT_4044at 8.662 kb on + strand, within EX28DRAFT_4044at 8.663 kb on - strand, within EX28DRAFT_4044at 8.732 kb on + strand, within EX28DRAFT_4044at 8.732 kb on + strand, within EX28DRAFT_4044at 8.733 kb on - strand, within EX28DRAFT_4044at 8.760 kb on - strand, within EX28DRAFT_4044at 8.760 kb on - strand, within EX28DRAFT_4044at 8.852 kb on + strand, within EX28DRAFT_4044at 8.852 kb on + strand, within EX28DRAFT_4044at 8.852 kb on + strand, within EX28DRAFT_4044at 8.852 kb on + strand, within EX28DRAFT_4044at 8.853 kb on - strand, within EX28DRAFT_4044at 8.888 kb on + strand, within EX28DRAFT_4044at 8.889 kb on - strand, within EX28DRAFT_4044at 8.889 kb on - strand, within EX28DRAFT_4044at 8.996 kb on + strand, within EX28DRAFT_4044at 9.056 kb on + strand, within EX28DRAFT_4044at 9.208 kb on + strand, within EX28DRAFT_4044at 9.209 kb on - strand, within EX28DRAFT_4044at 9.415 kb on + strand, within EX28DRAFT_4044at 9.416 kb on - strand, within EX28DRAFT_4044at 9.427 kb on + strand, within EX28DRAFT_4044at 9.428 kb on - strand, within EX28DRAFT_4044at 9.433 kb on + strand, within EX28DRAFT_4044at 9.579 kb on - strand, within EX28DRAFT_4044at 9.665 kb on + strand, within EX28DRAFT_4044at 9.665 kb on + strand, within EX28DRAFT_4044at 9.666 kb on - strand, within EX28DRAFT_4044at 9.667 kb on + strand, within EX28DRAFT_4044at 9.667 kb on + strand, within EX28DRAFT_4044at 9.667 kb on + strand, within EX28DRAFT_4044at 9.668 kb on - strand, within EX28DRAFT_4044at 9.754 kb on + strand, within EX28DRAFT_4044at 9.754 kb on + strand, within EX28DRAFT_4044at 9.754 kb on + strand, within EX28DRAFT_4044at 9.755 kb on - strand, within EX28DRAFT_4044at 9.758 kb on + strand, within EX28DRAFT_4044at 9.806 kb on + strand, within EX28DRAFT_4044at 9.806 kb on + strand, within EX28DRAFT_4044at 9.897 kb on - strand, within EX28DRAFT_4044at 9.923 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.925 kb on + strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.926 kb on - strand, within EX28DRAFT_4044at 9.947 kb on - strand, within EX28DRAFT_4044at 9.978 kb on - strand, within EX28DRAFT_4044at 10.037 kb on + strand, within EX28DRAFT_4044at 10.038 kb on - strand, within EX28DRAFT_4044at 10.038 kb on - strand, within EX28DRAFT_4044at 10.085 kb on - strand, within EX28DRAFT_4044at 10.166 kb on - strand, within EX28DRAFT_4044at 10.274 kb on + strand, within EX28DRAFT_4044at 10.274 kb on + strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.275 kb on - strand, within EX28DRAFT_4044at 10.354 kb on + strand, within EX28DRAFT_4044at 10.372 kb on + strandat 10.372 kb on + strandat 10.426 kb on + strandat 10.532 kb on - strandat 10.808 kb on + strandat 10.976 kb on + strand, within EX28DRAFT_4045at 11.068 kb on - strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.140 kb on + strand, within EX28DRAFT_4045at 11.328 kb on + strand, within EX28DRAFT_4045at 11.329 kb on - strand, within EX28DRAFT_4045at 11.523 kb on + strand, within EX28DRAFT_4045at 11.523 kb on + strand, within EX28DRAFT_4045at 11.524 kb on - strand, within EX28DRAFT_4045at 11.524 kb on - strand, within EX28DRAFT_4045

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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7,065 + -1.2
7,166 - EX28DRAFT_4042 0.56 +0.4
7,246 + -0.6
7,246 + +0.5
7,345 + EX28DRAFT_4043 0.11 +0.7
7,346 - EX28DRAFT_4043 0.11 -0.4
7,346 - EX28DRAFT_4043 0.11 +0.3
7,394 + EX28DRAFT_4043 0.18 +0.9
7,394 + EX28DRAFT_4043 0.18 +0.5
7,395 - EX28DRAFT_4043 0.18 +0.7
7,395 - EX28DRAFT_4043 0.18 +0.7
7,395 - EX28DRAFT_4043 0.18 +0.6
7,454 + EX28DRAFT_4043 0.26 +0.4
7,483 - EX28DRAFT_4043 0.30 +1.9
7,484 + EX28DRAFT_4043 0.30 +0.6
7,484 + EX28DRAFT_4043 0.30 +0.4
7,484 + EX28DRAFT_4043 0.30 -0.3
7,611 + EX28DRAFT_4043 0.47 +0.9
7,611 + EX28DRAFT_4043 0.47 +0.7
7,612 - EX28DRAFT_4043 0.47 +0.7
7,685 + EX28DRAFT_4043 0.56 +0.4
7,687 + EX28DRAFT_4043 0.57 +0.4
7,688 - EX28DRAFT_4043 0.57 +0.1
7,688 - EX28DRAFT_4043 0.57 -0.0
7,688 - EX28DRAFT_4043 0.57 -2.0
7,688 - EX28DRAFT_4043 0.57 -0.1
8,008 + +2.1
8,008 + +1.1
8,008 + -0.2
8,009 - +0.5
8,182 - +1.0
8,182 - -0.0
8,202 + +0.9
8,202 + +0.4
8,202 + +1.1
8,202 + +0.2
8,203 - +0.9
8,203 - +1.0
8,203 - +0.4
8,203 - -0.0
8,203 - +0.4
8,216 - +0.1
8,252 + +0.0
8,388 + EX28DRAFT_4044 0.14 +0.4
8,507 - EX28DRAFT_4044 0.19 +0.4
8,509 + EX28DRAFT_4044 0.19 +0.2
8,509 + EX28DRAFT_4044 0.19 +0.2
8,619 + EX28DRAFT_4044 0.23 +0.3
8,646 - EX28DRAFT_4044 0.24 +0.6
8,660 + EX28DRAFT_4044 0.25 +0.7
8,662 + EX28DRAFT_4044 0.25 +0.4
8,663 - EX28DRAFT_4044 0.25 -0.9
8,732 + EX28DRAFT_4044 0.28 +0.3
8,732 + EX28DRAFT_4044 0.28 +0.5
8,733 - EX28DRAFT_4044 0.28 +0.1
8,760 - EX28DRAFT_4044 0.29 +0.6
8,760 - EX28DRAFT_4044 0.29 +0.3
8,852 + EX28DRAFT_4044 0.32 +0.2
8,852 + EX28DRAFT_4044 0.32 +1.2
8,852 + EX28DRAFT_4044 0.32 +0.7
8,852 + EX28DRAFT_4044 0.32 +0.2
8,853 - EX28DRAFT_4044 0.32 -0.5
8,888 + EX28DRAFT_4044 0.34 +0.3
8,889 - EX28DRAFT_4044 0.34 +0.6
8,889 - EX28DRAFT_4044 0.34 +0.7
8,996 + EX28DRAFT_4044 0.38 +0.8
9,056 + EX28DRAFT_4044 0.40 +0.5
9,208 + EX28DRAFT_4044 0.46 +1.1
9,209 - EX28DRAFT_4044 0.46 +0.3
9,415 + EX28DRAFT_4044 0.54 +0.5
9,416 - EX28DRAFT_4044 0.54 -0.1
9,427 + EX28DRAFT_4044 0.54 -1.2
9,428 - EX28DRAFT_4044 0.54 +0.9
9,433 + EX28DRAFT_4044 0.54 +0.5
9,579 - EX28DRAFT_4044 0.60 +0.3
9,665 + EX28DRAFT_4044 0.63 +0.0
9,665 + EX28DRAFT_4044 0.63 +0.3
9,666 - EX28DRAFT_4044 0.63 -0.1
9,667 + EX28DRAFT_4044 0.63 +0.2
9,667 + EX28DRAFT_4044 0.63 -0.0
9,667 + EX28DRAFT_4044 0.63 -1.7
9,668 - EX28DRAFT_4044 0.63 +0.5
9,754 + EX28DRAFT_4044 0.67 -0.2
9,754 + EX28DRAFT_4044 0.67 -0.4
9,754 + EX28DRAFT_4044 0.67 +0.0
9,755 - EX28DRAFT_4044 0.67 +0.3
9,758 + EX28DRAFT_4044 0.67 -0.5
9,806 + EX28DRAFT_4044 0.69 +0.2
9,806 + EX28DRAFT_4044 0.69 +0.3
9,897 - EX28DRAFT_4044 0.72 +1.1
9,923 + EX28DRAFT_4044 0.73 +0.3
9,925 + EX28DRAFT_4044 0.73 +0.2
9,925 + EX28DRAFT_4044 0.73 +0.3
9,925 + EX28DRAFT_4044 0.73 +0.5
9,926 - EX28DRAFT_4044 0.73 -0.9
9,926 - EX28DRAFT_4044 0.73 +0.3
9,926 - EX28DRAFT_4044 0.73 +0.8
9,947 - EX28DRAFT_4044 0.74 -0.2
9,978 - EX28DRAFT_4044 0.75 +0.6
10,037 + EX28DRAFT_4044 0.78 +0.3
10,038 - EX28DRAFT_4044 0.78 +0.2
10,038 - EX28DRAFT_4044 0.78 +0.3
10,085 - EX28DRAFT_4044 0.79 +0.7
10,166 - EX28DRAFT_4044 0.82 +0.2
10,274 + EX28DRAFT_4044 0.87 -0.1
10,274 + EX28DRAFT_4044 0.87 -0.7
10,275 - EX28DRAFT_4044 0.87 +1.0
10,275 - EX28DRAFT_4044 0.87 +0.0
10,275 - EX28DRAFT_4044 0.87 -0.2
10,354 + EX28DRAFT_4044 0.90 -0.3
10,372 + -0.2
10,372 + -1.3
10,426 + +0.3
10,532 - +0.3
10,808 + -0.5
10,976 + EX28DRAFT_4045 0.13 +0.9
11,068 - EX28DRAFT_4045 0.17 +0.5
11,140 + EX28DRAFT_4045 0.20 +1.1
11,140 + EX28DRAFT_4045 0.20 -0.3
11,140 + EX28DRAFT_4045 0.20 +2.2
11,140 + EX28DRAFT_4045 0.20 +0.9
11,140 + EX28DRAFT_4045 0.20 -0.2
11,328 + EX28DRAFT_4045 0.28 -0.2
11,329 - EX28DRAFT_4045 0.28 +0.4
11,523 + EX28DRAFT_4045 0.36 -0.1
11,523 + EX28DRAFT_4045 0.36 +0.2
11,524 - EX28DRAFT_4045 0.36 +0.4
11,524 - EX28DRAFT_4045 0.36 +0.4

Or see this region's nucleotide sequence