Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3838 and EX28DRAFT_3839 are separated by 93 nucleotides EX28DRAFT_3839 and EX28DRAFT_3840 are separated by 289 nucleotides EX28DRAFT_3840 and EX28DRAFT_3841 are separated by 395 nucleotides
EX28DRAFT_3838: EX28DRAFT_3838 - Fe-S-cluster-containing hydrogenase components 2, at 45,731 to 46,186
_3838
EX28DRAFT_3839: EX28DRAFT_3839 - Helix-turn-helix domain, at 46,280 to 46,691
_3839
EX28DRAFT_3840: EX28DRAFT_3840 - Uncharacterized conserved protein, at 46,981 to 48,057
_3840
EX28DRAFT_3841: EX28DRAFT_3841 - Outer membrane protein V, at 48,453 to 49,193
_3841
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.047 kb on + strand, within EX28DRAFT_3838 at 46.048 kb on - strand, within EX28DRAFT_3838 at 46.207 kb on + strand at 46.207 kb on + strand at 46.207 kb on + strand at 46.231 kb on + strand at 46.231 kb on + strand at 46.232 kb on - strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.270 kb on + strand at 46.291 kb on + strand at 46.292 kb on - strand at 46.294 kb on + strand at 46.294 kb on + strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.295 kb on - strand at 46.308 kb on + strand at 46.334 kb on + strand, within EX28DRAFT_3839 at 46.506 kb on + strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.507 kb on - strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.519 kb on + strand, within EX28DRAFT_3839 at 46.520 kb on - strand, within EX28DRAFT_3839 at 46.671 kb on + strand at 46.672 kb on - strand at 46.710 kb on - strand at 46.721 kb on + strand at 46.773 kb on + strand at 46.773 kb on + strand at 46.774 kb on - strand at 46.783 kb on + strand at 46.784 kb on - strand at 46.837 kb on + strand at 46.846 kb on - strand at 46.914 kb on + strand at 46.936 kb on + strand at 46.937 kb on - strand at 47.021 kb on + strand at 47.443 kb on - strand, within EX28DRAFT_3840 at 47.590 kb on - strand, within EX28DRAFT_3840 at 47.676 kb on + strand, within EX28DRAFT_3840 at 47.685 kb on + strand, within EX28DRAFT_3840 at 47.737 kb on - strand, within EX28DRAFT_3840 at 47.755 kb on - strand, within EX28DRAFT_3840 at 48.007 kb on - strand at 48.007 kb on - strand at 48.047 kb on + strand at 48.049 kb on + strand at 48.051 kb on + strand at 48.052 kb on - strand at 48.052 kb on - strand at 48.248 kb on + strand at 48.303 kb on - strand at 48.387 kb on - strand at 48.544 kb on + strand, within EX28DRAFT_3841 at 48.565 kb on + strand, within EX28DRAFT_3841 at 48.565 kb on + strand, within EX28DRAFT_3841 at 48.607 kb on + strand, within EX28DRAFT_3841 at 48.608 kb on - strand, within EX28DRAFT_3841 at 48.608 kb on - strand, within EX28DRAFT_3841 at 48.634 kb on + strand, within EX28DRAFT_3841 at 48.679 kb on + strand, within EX28DRAFT_3841 at 48.682 kb on + strand, within EX28DRAFT_3841 at 48.683 kb on - strand, within EX28DRAFT_3841 at 48.766 kb on + strand, within EX28DRAFT_3841 at 48.767 kb on - strand, within EX28DRAFT_3841 at 48.856 kb on + strand, within EX28DRAFT_3841 at 48.857 kb on - strand, within EX28DRAFT_3841
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 46,047 + EX28DRAFT_3838 0.69 -0.6 46,048 - EX28DRAFT_3838 0.70 +2.0 46,207 + -0.3 46,207 + +0.8 46,207 + +0.2 46,231 + +0.0 46,231 + +0.7 46,232 - +0.4 46,270 + -3.2 46,270 + -0.4 46,270 + +0.4 46,270 + -0.2 46,291 + +1.2 46,292 - -0.0 46,294 + -0.1 46,294 + -0.4 46,295 - +0.0 46,295 - +0.1 46,295 - +0.2 46,308 + +0.1 46,334 + EX28DRAFT_3839 0.13 +0.3 46,506 + EX28DRAFT_3839 0.55 +0.3 46,507 - EX28DRAFT_3839 0.55 -0.3 46,507 - EX28DRAFT_3839 0.55 -0.1 46,519 + EX28DRAFT_3839 0.58 -0.0 46,519 + EX28DRAFT_3839 0.58 -0.2 46,520 - EX28DRAFT_3839 0.58 +0.5 46,671 + -0.6 46,672 - -0.2 46,710 - +0.6 46,721 + -0.2 46,773 + -0.6 46,773 + -0.0 46,774 - +0.3 46,783 + +0.1 46,784 - -0.0 46,837 + -0.2 46,846 - -0.1 46,914 + +0.2 46,936 + +1.1 46,937 - +0.3 47,021 + -0.0 47,443 - EX28DRAFT_3840 0.43 -0.5 47,590 - EX28DRAFT_3840 0.57 -0.1 47,676 + EX28DRAFT_3840 0.65 +1.1 47,685 + EX28DRAFT_3840 0.65 +0.3 47,737 - EX28DRAFT_3840 0.70 +0.0 47,755 - EX28DRAFT_3840 0.72 +0.4 48,007 - +0.3 48,007 - +0.3 48,047 + -0.0 48,049 + +0.9 48,051 + -0.3 48,052 - -0.1 48,052 - +0.4 48,248 + -0.7 48,303 - +0.9 48,387 - +0.1 48,544 + EX28DRAFT_3841 0.12 -0.2 48,565 + EX28DRAFT_3841 0.15 +0.1 48,565 + EX28DRAFT_3841 0.15 -0.3 48,607 + EX28DRAFT_3841 0.21 +0.1 48,608 - EX28DRAFT_3841 0.21 +0.0 48,608 - EX28DRAFT_3841 0.21 -0.1 48,634 + EX28DRAFT_3841 0.24 +0.5 48,679 + EX28DRAFT_3841 0.30 +0.1 48,682 + EX28DRAFT_3841 0.31 +0.1 48,683 - EX28DRAFT_3841 0.31 -0.2 48,766 + EX28DRAFT_3841 0.42 +0.1 48,767 - EX28DRAFT_3841 0.42 +0.2 48,856 + EX28DRAFT_3841 0.54 -0.2 48,857 - EX28DRAFT_3841 0.55 +0.1
Or see this region's nucleotide sequence