Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3807

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3806 and EX28DRAFT_3807 are separated by 239 nucleotidesEX28DRAFT_3807 and EX28DRAFT_3808 are separated by 238 nucleotides EX28DRAFT_3806: EX28DRAFT_3806 - Predicted membrane-associated, metal-dependent hydrolase, at 9,169 to 10,863 _3806 EX28DRAFT_3807: EX28DRAFT_3807 - oxalate/formate antiporter family transporter, at 11,103 to 12,305 _3807 EX28DRAFT_3808: EX28DRAFT_3808 - Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion, at 12,544 to 13,242 _3808 Position (kb) 11 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 10.115 kb on + strand, within EX28DRAFT_3806at 10.115 kb on + strand, within EX28DRAFT_3806at 10.115 kb on + strand, within EX28DRAFT_3806at 10.115 kb on + strand, within EX28DRAFT_3806at 10.115 kb on + strand, within EX28DRAFT_3806at 10.116 kb on - strand, within EX28DRAFT_3806at 10.116 kb on - strand, within EX28DRAFT_3806at 10.116 kb on - strand, within EX28DRAFT_3806at 10.120 kb on - strand, within EX28DRAFT_3806at 10.120 kb on - strand, within EX28DRAFT_3806at 10.120 kb on - strand, within EX28DRAFT_3806at 10.149 kb on - strand, within EX28DRAFT_3806at 10.217 kb on + strand, within EX28DRAFT_3806at 10.254 kb on - strand, within EX28DRAFT_3806at 10.254 kb on - strand, within EX28DRAFT_3806at 10.254 kb on - strand, within EX28DRAFT_3806at 10.277 kb on + strand, within EX28DRAFT_3806at 10.287 kb on + strand, within EX28DRAFT_3806at 10.428 kb on + strand, within EX28DRAFT_3806at 10.428 kb on + strand, within EX28DRAFT_3806at 10.430 kb on + strand, within EX28DRAFT_3806at 10.440 kb on + strand, within EX28DRAFT_3806at 10.478 kb on - strand, within EX28DRAFT_3806at 10.581 kb on + strand, within EX28DRAFT_3806at 10.581 kb on + strand, within EX28DRAFT_3806at 10.582 kb on - strand, within EX28DRAFT_3806at 10.582 kb on - strand, within EX28DRAFT_3806at 10.593 kb on - strand, within EX28DRAFT_3806at 10.593 kb on - strand, within EX28DRAFT_3806at 10.595 kb on + strand, within EX28DRAFT_3806at 10.595 kb on + strand, within EX28DRAFT_3806at 10.596 kb on - strand, within EX28DRAFT_3806at 10.596 kb on - strand, within EX28DRAFT_3806at 10.615 kb on - strand, within EX28DRAFT_3806at 10.647 kb on + strand, within EX28DRAFT_3806at 10.676 kb on - strand, within EX28DRAFT_3806at 10.676 kb on - strand, within EX28DRAFT_3806at 10.708 kb on + strandat 10.708 kb on + strandat 10.708 kb on + strandat 10.734 kb on + strandat 10.735 kb on - strandat 10.735 kb on - strandat 10.735 kb on - strandat 10.735 kb on - strandat 10.757 kb on + strandat 10.781 kb on - strandat 10.798 kb on + strandat 10.809 kb on - strandat 10.852 kb on - strandat 10.856 kb on + strandat 10.856 kb on + strandat 10.857 kb on - strandat 10.887 kb on + strandat 10.890 kb on - strandat 10.931 kb on + strandat 10.931 kb on + strandat 10.953 kb on + strandat 10.954 kb on - strandat 10.978 kb on + strandat 11.066 kb on + strandat 11.098 kb on - strandat 11.124 kb on + strandat 11.125 kb on - strandat 11.125 kb on - strandat 11.187 kb on + strandat 11.187 kb on + strandat 11.187 kb on + strandat 11.206 kb on + strandat 11.207 kb on - strandat 11.207 kb on - strandat 11.207 kb on - strandat 11.269 kb on + strand, within EX28DRAFT_3807at 11.270 kb on - strand, within EX28DRAFT_3807at 11.270 kb on - strand, within EX28DRAFT_3807at 11.391 kb on - strand, within EX28DRAFT_3807at 11.456 kb on + strand, within EX28DRAFT_3807at 11.611 kb on + strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.612 kb on - strand, within EX28DRAFT_3807at 11.670 kb on - strand, within EX28DRAFT_3807at 11.801 kb on + strand, within EX28DRAFT_3807at 11.801 kb on + strand, within EX28DRAFT_3807at 11.802 kb on - strand, within EX28DRAFT_3807at 11.875 kb on + strand, within EX28DRAFT_3807at 11.875 kb on + strand, within EX28DRAFT_3807at 12.206 kb on + strandat 12.206 kb on + strandat 12.224 kb on - strandat 12.270 kb on - strandat 12.287 kb on + strandat 12.290 kb on - strandat 12.290 kb on - strandat 12.290 kb on - strandat 12.329 kb on + strandat 12.366 kb on + strandat 12.366 kb on + strandat 12.575 kb on - strandat 12.575 kb on - strandat 12.758 kb on + strand, within EX28DRAFT_3808at 12.763 kb on - strand, within EX28DRAFT_3808at 13.006 kb on + strand, within EX28DRAFT_3808at 13.006 kb on + strand, within EX28DRAFT_3808at 13.007 kb on - strand, within EX28DRAFT_3808at 13.007 kb on - strand, within EX28DRAFT_3808at 13.007 kb on - strand, within EX28DRAFT_3808at 13.008 kb on + strand, within EX28DRAFT_3808at 13.009 kb on - strand, within EX28DRAFT_3808at 13.009 kb on - strand, within EX28DRAFT_3808at 13.009 kb on - strand, within EX28DRAFT_3808at 13.048 kb on - strand, within EX28DRAFT_3808at 13.063 kb on - strand, within EX28DRAFT_3808at 13.063 kb on - strand, within EX28DRAFT_3808at 13.098 kb on + strand, within EX28DRAFT_3808at 13.098 kb on + strand, within EX28DRAFT_3808at 13.099 kb on - strand, within EX28DRAFT_3808at 13.099 kb on - strand, within EX28DRAFT_3808at 13.099 kb on - strand, within EX28DRAFT_3808at 13.099 kb on - strand, within EX28DRAFT_3808at 13.116 kb on + strand, within EX28DRAFT_3808at 13.137 kb on + strand, within EX28DRAFT_3808at 13.138 kb on - strand, within EX28DRAFT_3808at 13.139 kb on + strand, within EX28DRAFT_3808at 13.139 kb on + strand, within EX28DRAFT_3808at 13.139 kb on + strand, within EX28DRAFT_3808at 13.139 kb on + strand, within EX28DRAFT_3808at 13.140 kb on - strand, within EX28DRAFT_3808at 13.165 kb on - strand, within EX28DRAFT_3808at 13.165 kb on - strand, within EX28DRAFT_3808at 13.235 kb on - strandat 13.276 kb on + strandat 13.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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10,115 + EX28DRAFT_3806 0.56 +0.0
10,115 + EX28DRAFT_3806 0.56 +0.0
10,115 + EX28DRAFT_3806 0.56 +0.0
10,115 + EX28DRAFT_3806 0.56 -0.5
10,115 + EX28DRAFT_3806 0.56 +0.5
10,116 - EX28DRAFT_3806 0.56 -1.4
10,116 - EX28DRAFT_3806 0.56 -0.4
10,116 - EX28DRAFT_3806 0.56 -0.7
10,120 - EX28DRAFT_3806 0.56 +0.2
10,120 - EX28DRAFT_3806 0.56 +0.1
10,120 - EX28DRAFT_3806 0.56 -0.4
10,149 - EX28DRAFT_3806 0.58 +0.4
10,217 + EX28DRAFT_3806 0.62 -0.2
10,254 - EX28DRAFT_3806 0.64 +0.7
10,254 - EX28DRAFT_3806 0.64 +0.0
10,254 - EX28DRAFT_3806 0.64 -0.1
10,277 + EX28DRAFT_3806 0.65 +0.3
10,287 + EX28DRAFT_3806 0.66 +1.0
10,428 + EX28DRAFT_3806 0.74 +0.1
10,428 + EX28DRAFT_3806 0.74 -0.2
10,430 + EX28DRAFT_3806 0.74 -0.1
10,440 + EX28DRAFT_3806 0.75 -1.0
10,478 - EX28DRAFT_3806 0.77 +0.3
10,581 + EX28DRAFT_3806 0.83 +0.1
10,581 + EX28DRAFT_3806 0.83 +0.5
10,582 - EX28DRAFT_3806 0.83 +0.0
10,582 - EX28DRAFT_3806 0.83 +0.2
10,593 - EX28DRAFT_3806 0.84 -0.1
10,593 - EX28DRAFT_3806 0.84 +0.3
10,595 + EX28DRAFT_3806 0.84 +0.1
10,595 + EX28DRAFT_3806 0.84 -0.3
10,596 - EX28DRAFT_3806 0.84 -0.5
10,596 - EX28DRAFT_3806 0.84 +0.0
10,615 - EX28DRAFT_3806 0.85 +0.5
10,647 + EX28DRAFT_3806 0.87 -1.1
10,676 - EX28DRAFT_3806 0.89 +0.0
10,676 - EX28DRAFT_3806 0.89 +0.5
10,708 + -0.2
10,708 + -1.2
10,708 + +0.1
10,734 + -0.5
10,735 - -0.3
10,735 - -0.2
10,735 - -0.7
10,735 - +0.0
10,757 + +1.4
10,781 - -0.6
10,798 + +0.5
10,809 - -0.2
10,852 - -0.2
10,856 + -0.6
10,856 + -1.4
10,857 - +0.4
10,887 + -0.3
10,890 - +2.2
10,931 + -0.1
10,931 + +0.2
10,953 + -0.7
10,954 - -0.1
10,978 + -0.6
11,066 + -0.3
11,098 - -0.9
11,124 + -0.5
11,125 - -0.4
11,125 - +0.1
11,187 + +0.1
11,187 + -0.2
11,187 + -0.2
11,206 + -0.2
11,207 - +0.3
11,207 - -0.3
11,207 - -0.0
11,269 + EX28DRAFT_3807 0.14 -3.1
11,270 - EX28DRAFT_3807 0.14 -1.0
11,270 - EX28DRAFT_3807 0.14 +0.5
11,391 - EX28DRAFT_3807 0.24 +0.2
11,456 + EX28DRAFT_3807 0.29 -0.3
11,611 + EX28DRAFT_3807 0.42 -0.0
11,612 - EX28DRAFT_3807 0.42 +0.1
11,612 - EX28DRAFT_3807 0.42 +0.1
11,612 - EX28DRAFT_3807 0.42 +0.4
11,612 - EX28DRAFT_3807 0.42 -0.8
11,612 - EX28DRAFT_3807 0.42 +0.0
11,612 - EX28DRAFT_3807 0.42 -0.2
11,670 - EX28DRAFT_3807 0.47 -0.4
11,801 + EX28DRAFT_3807 0.58 -1.0
11,801 + EX28DRAFT_3807 0.58 -0.2
11,802 - EX28DRAFT_3807 0.58 +0.5
11,875 + EX28DRAFT_3807 0.64 +0.2
11,875 + EX28DRAFT_3807 0.64 -0.4
12,206 + +0.4
12,206 + +0.1
12,224 - +0.1
12,270 - +0.9
12,287 + -0.0
12,290 - +0.6
12,290 - +0.8
12,290 - -0.3
12,329 + -0.5
12,366 + -0.2
12,366 + +0.6
12,575 - -0.5
12,575 - -0.1
12,758 + EX28DRAFT_3808 0.31 -0.2
12,763 - EX28DRAFT_3808 0.31 +0.2
13,006 + EX28DRAFT_3808 0.66 -0.3
13,006 + EX28DRAFT_3808 0.66 -1.0
13,007 - EX28DRAFT_3808 0.66 +1.0
13,007 - EX28DRAFT_3808 0.66 -0.3
13,007 - EX28DRAFT_3808 0.66 +0.7
13,008 + EX28DRAFT_3808 0.66 -1.5
13,009 - EX28DRAFT_3808 0.67 +0.0
13,009 - EX28DRAFT_3808 0.67 +0.7
13,009 - EX28DRAFT_3808 0.67 -0.2
13,048 - EX28DRAFT_3808 0.72 -0.9
13,063 - EX28DRAFT_3808 0.74 +0.0
13,063 - EX28DRAFT_3808 0.74 +0.9
13,098 + EX28DRAFT_3808 0.79 +0.1
13,098 + EX28DRAFT_3808 0.79 -0.0
13,099 - EX28DRAFT_3808 0.79 +0.5
13,099 - EX28DRAFT_3808 0.79 -0.3
13,099 - EX28DRAFT_3808 0.79 +1.0
13,099 - EX28DRAFT_3808 0.79 +2.0
13,116 + EX28DRAFT_3808 0.82 -0.1
13,137 + EX28DRAFT_3808 0.85 -0.9
13,138 - EX28DRAFT_3808 0.85 +0.3
13,139 + EX28DRAFT_3808 0.85 -0.6
13,139 + EX28DRAFT_3808 0.85 -0.1
13,139 + EX28DRAFT_3808 0.85 +0.2
13,139 + EX28DRAFT_3808 0.85 +0.1
13,140 - EX28DRAFT_3808 0.85 +2.0
13,165 - EX28DRAFT_3808 0.89 -0.3
13,165 - EX28DRAFT_3808 0.89 -0.6
13,235 - +0.3
13,276 + +0.4
13,304 - +1.1

Or see this region's nucleotide sequence