Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3774

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3773 and EX28DRAFT_3774 are separated by 100 nucleotidesEX28DRAFT_3774 and EX28DRAFT_3775 are separated by 65 nucleotidesEX28DRAFT_3775 and EX28DRAFT_3776 are separated by 58 nucleotides EX28DRAFT_3773: EX28DRAFT_3773 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 456,088 to 457,047 _3773 EX28DRAFT_3774: EX28DRAFT_3774 - Arginine/lysine/ornithine decarboxylases, at 457,148 to 459,280 _3774 EX28DRAFT_3775: EX28DRAFT_3775 - Lactoylglutathione lyase and related lyases, at 459,346 to 459,735 _3775 EX28DRAFT_3776: EX28DRAFT_3776 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 459,794 to 461,083 _3776 Position (kb) 457 458 459 460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 457.034 kb on - strandat 457.045 kb on + strandat 457.092 kb on + strandat 457.114 kb on + strandat 457.114 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.120 kb on + strandat 457.121 kb on - strandat 457.125 kb on - strandat 457.154 kb on - strandat 457.190 kb on - strandat 457.190 kb on - strandat 457.246 kb on - strandat 457.332 kb on - strandat 457.374 kb on - strand, within EX28DRAFT_3774at 457.397 kb on - strand, within EX28DRAFT_3774at 457.397 kb on - strand, within EX28DRAFT_3774at 457.399 kb on + strand, within EX28DRAFT_3774at 457.433 kb on - strand, within EX28DRAFT_3774at 457.460 kb on + strand, within EX28DRAFT_3774at 457.484 kb on - strand, within EX28DRAFT_3774at 457.505 kb on + strand, within EX28DRAFT_3774at 457.505 kb on + strand, within EX28DRAFT_3774at 457.506 kb on - strand, within EX28DRAFT_3774at 457.506 kb on - strand, within EX28DRAFT_3774at 457.562 kb on + strand, within EX28DRAFT_3774at 457.580 kb on + strand, within EX28DRAFT_3774at 457.580 kb on + strand, within EX28DRAFT_3774at 457.581 kb on - strand, within EX28DRAFT_3774at 457.581 kb on - strand, within EX28DRAFT_3774at 457.581 kb on - strand, within EX28DRAFT_3774at 457.581 kb on - strand, within EX28DRAFT_3774at 457.582 kb on + strand, within EX28DRAFT_3774at 457.583 kb on - strand, within EX28DRAFT_3774at 457.592 kb on - strand, within EX28DRAFT_3774at 457.603 kb on + strand, within EX28DRAFT_3774at 457.649 kb on + strand, within EX28DRAFT_3774at 457.754 kb on + strand, within EX28DRAFT_3774at 457.755 kb on - strand, within EX28DRAFT_3774at 457.755 kb on - strand, within EX28DRAFT_3774at 457.755 kb on - strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.787 kb on + strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.788 kb on - strand, within EX28DRAFT_3774at 457.789 kb on + strand, within EX28DRAFT_3774at 457.790 kb on - strand, within EX28DRAFT_3774at 457.790 kb on - strand, within EX28DRAFT_3774at 457.790 kb on - strand, within EX28DRAFT_3774at 457.836 kb on - strand, within EX28DRAFT_3774at 457.921 kb on - strand, within EX28DRAFT_3774at 458.008 kb on + strand, within EX28DRAFT_3774at 458.008 kb on + strand, within EX28DRAFT_3774at 458.009 kb on - strand, within EX28DRAFT_3774at 458.085 kb on - strand, within EX28DRAFT_3774at 458.085 kb on - strand, within EX28DRAFT_3774at 458.154 kb on - strand, within EX28DRAFT_3774at 458.246 kb on - strand, within EX28DRAFT_3774at 458.278 kb on + strand, within EX28DRAFT_3774at 458.279 kb on - strand, within EX28DRAFT_3774at 458.327 kb on - strand, within EX28DRAFT_3774at 458.327 kb on - strand, within EX28DRAFT_3774at 458.336 kb on - strand, within EX28DRAFT_3774at 458.336 kb on - strand, within EX28DRAFT_3774at 458.373 kb on + strand, within EX28DRAFT_3774at 458.373 kb on + strand, within EX28DRAFT_3774at 458.374 kb on - strand, within EX28DRAFT_3774at 458.596 kb on + strand, within EX28DRAFT_3774at 458.596 kb on + strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.597 kb on - strand, within EX28DRAFT_3774at 458.739 kb on - strand, within EX28DRAFT_3774at 458.852 kb on - strand, within EX28DRAFT_3774at 458.888 kb on + strand, within EX28DRAFT_3774at 458.986 kb on - strand, within EX28DRAFT_3774at 459.332 kb on - strandat 459.332 kb on - strandat 459.345 kb on + strandat 459.345 kb on + strandat 459.345 kb on + strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.357 kb on - strandat 459.372 kb on + strandat 459.435 kb on + strand, within EX28DRAFT_3775at 459.435 kb on + strand, within EX28DRAFT_3775at 459.436 kb on - strand, within EX28DRAFT_3775at 459.505 kb on + strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.733 kb on + strandat 459.734 kb on - strandat 459.779 kb on + strandat 459.785 kb on + strandat 459.793 kb on + strandat 459.801 kb on + strandat 459.802 kb on - strandat 459.802 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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457,034 - -0.2
457,045 + +0.7
457,092 + +0.5
457,114 + +0.2
457,114 + -0.0
457,120 + -0.1
457,120 + +0.1
457,120 + -0.4
457,120 + +0.2
457,120 + +0.8
457,120 + +0.6
457,120 + +0.2
457,121 - -0.5
457,125 - -0.2
457,154 - +2.0
457,190 - +0.7
457,190 - +0.3
457,246 - +0.5
457,332 - +0.3
457,374 - EX28DRAFT_3774 0.11 +0.7
457,397 - EX28DRAFT_3774 0.12 -0.1
457,397 - EX28DRAFT_3774 0.12 +0.8
457,399 + EX28DRAFT_3774 0.12 +0.7
457,433 - EX28DRAFT_3774 0.13 +0.7
457,460 + EX28DRAFT_3774 0.15 +0.1
457,484 - EX28DRAFT_3774 0.16 +0.3
457,505 + EX28DRAFT_3774 0.17 +0.8
457,505 + EX28DRAFT_3774 0.17 +0.2
457,506 - EX28DRAFT_3774 0.17 +0.1
457,506 - EX28DRAFT_3774 0.17 +0.3
457,562 + EX28DRAFT_3774 0.19 +0.4
457,580 + EX28DRAFT_3774 0.20 +0.4
457,580 + EX28DRAFT_3774 0.20 +0.3
457,581 - EX28DRAFT_3774 0.20 +0.1
457,581 - EX28DRAFT_3774 0.20 +0.1
457,581 - EX28DRAFT_3774 0.20 -0.6
457,581 - EX28DRAFT_3774 0.20 -1.9
457,582 + EX28DRAFT_3774 0.20 -0.1
457,583 - EX28DRAFT_3774 0.20 +0.0
457,592 - EX28DRAFT_3774 0.21 -0.4
457,603 + EX28DRAFT_3774 0.21 +0.5
457,649 + EX28DRAFT_3774 0.23 -0.2
457,754 + EX28DRAFT_3774 0.28 +0.3
457,755 - EX28DRAFT_3774 0.28 +0.9
457,755 - EX28DRAFT_3774 0.28 +0.4
457,755 - EX28DRAFT_3774 0.28 +1.2
457,787 + EX28DRAFT_3774 0.30 +0.2
457,787 + EX28DRAFT_3774 0.30 -0.7
457,787 + EX28DRAFT_3774 0.30 -0.6
457,787 + EX28DRAFT_3774 0.30 +0.7
457,787 + EX28DRAFT_3774 0.30 -1.1
457,787 + EX28DRAFT_3774 0.30 -0.1
457,787 + EX28DRAFT_3774 0.30 +0.0
457,787 + EX28DRAFT_3774 0.30 +0.2
457,787 + EX28DRAFT_3774 0.30 +0.3
457,787 + EX28DRAFT_3774 0.30 -0.1
457,788 - EX28DRAFT_3774 0.30 +0.6
457,788 - EX28DRAFT_3774 0.30 -0.4
457,788 - EX28DRAFT_3774 0.30 -0.2
457,788 - EX28DRAFT_3774 0.30 +0.1
457,788 - EX28DRAFT_3774 0.30 +0.0
457,788 - EX28DRAFT_3774 0.30 +0.2
457,788 - EX28DRAFT_3774 0.30 +0.8
457,788 - EX28DRAFT_3774 0.30 +0.5
457,788 - EX28DRAFT_3774 0.30 -0.4
457,788 - EX28DRAFT_3774 0.30 -0.4
457,789 + EX28DRAFT_3774 0.30 -0.2
457,790 - EX28DRAFT_3774 0.30 -0.8
457,790 - EX28DRAFT_3774 0.30 +0.9
457,790 - EX28DRAFT_3774 0.30 +0.5
457,836 - EX28DRAFT_3774 0.32 +0.4
457,921 - EX28DRAFT_3774 0.36 +0.7
458,008 + EX28DRAFT_3774 0.40 +0.4
458,008 + EX28DRAFT_3774 0.40 -2.6
458,009 - EX28DRAFT_3774 0.40 +0.1
458,085 - EX28DRAFT_3774 0.44 +0.5
458,085 - EX28DRAFT_3774 0.44 +0.2
458,154 - EX28DRAFT_3774 0.47 +0.3
458,246 - EX28DRAFT_3774 0.51 +0.5
458,278 + EX28DRAFT_3774 0.53 -0.2
458,279 - EX28DRAFT_3774 0.53 -0.5
458,327 - EX28DRAFT_3774 0.55 -2.0
458,327 - EX28DRAFT_3774 0.55 +0.2
458,336 - EX28DRAFT_3774 0.56 -0.2
458,336 - EX28DRAFT_3774 0.56 +0.1
458,373 + EX28DRAFT_3774 0.57 +0.6
458,373 + EX28DRAFT_3774 0.57 +0.1
458,374 - EX28DRAFT_3774 0.57 -0.2
458,596 + EX28DRAFT_3774 0.68 +0.5
458,596 + EX28DRAFT_3774 0.68 -0.3
458,597 - EX28DRAFT_3774 0.68 +0.1
458,597 - EX28DRAFT_3774 0.68 +0.2
458,597 - EX28DRAFT_3774 0.68 -0.9
458,597 - EX28DRAFT_3774 0.68 +0.2
458,597 - EX28DRAFT_3774 0.68 +0.3
458,597 - EX28DRAFT_3774 0.68 +0.5
458,739 - EX28DRAFT_3774 0.75 -0.6
458,852 - EX28DRAFT_3774 0.80 +0.1
458,888 + EX28DRAFT_3774 0.82 -0.6
458,986 - EX28DRAFT_3774 0.86 +0.2
459,332 - +1.4
459,332 - +1.0
459,345 + -0.4
459,345 + -2.8
459,345 + +0.7
459,346 - -0.7
459,346 - +0.9
459,346 - +0.1
459,346 - -1.3
459,346 - -0.1
459,357 - -1.1
459,372 + +0.6
459,435 + EX28DRAFT_3775 0.23 +1.4
459,435 + EX28DRAFT_3775 0.23 +0.4
459,436 - EX28DRAFT_3775 0.23 +1.6
459,505 + EX28DRAFT_3775 0.41 +1.2
459,506 - EX28DRAFT_3775 0.41 +0.5
459,506 - EX28DRAFT_3775 0.41 -0.6
459,506 - EX28DRAFT_3775 0.41 -0.2
459,733 + -0.1
459,734 - +0.1
459,779 + -1.0
459,785 + +0.3
459,793 + -0.2
459,801 + +1.4
459,802 - +0.5
459,802 - -0.0

Or see this region's nucleotide sequence