Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3749

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3747 and EX28DRAFT_3748 overlap by 8 nucleotidesEX28DRAFT_3748 and EX28DRAFT_3749 are separated by 82 nucleotidesEX28DRAFT_3749 and EX28DRAFT_3750 are separated by 131 nucleotides EX28DRAFT_3747: EX28DRAFT_3747 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 426,338 to 427,138 _3747 EX28DRAFT_3748: EX28DRAFT_3748 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 427,131 to 427,829 _3748 EX28DRAFT_3749: EX28DRAFT_3749 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 427,912 to 429,426 _3749 EX28DRAFT_3750: EX28DRAFT_3750 - periplasmic serine protease, Do/DeqQ family, at 429,558 to 430,994 _3750 Position (kb) 427 428 429 430Strain fitness (log2 ratio) -1 0 1 2at 426.994 kb on + strand, within EX28DRAFT_3747at 426.995 kb on - strand, within EX28DRAFT_3747at 427.039 kb on + strand, within EX28DRAFT_3747at 427.040 kb on - strand, within EX28DRAFT_3747at 427.057 kb on + strand, within EX28DRAFT_3747at 427.078 kb on - strandat 427.078 kb on - strandat 427.126 kb on + strandat 427.127 kb on - strandat 427.133 kb on - strandat 427.855 kb on - strandat 427.864 kb on - strandat 427.868 kb on + strandat 428.002 kb on - strandat 428.146 kb on + strand, within EX28DRAFT_3749at 428.146 kb on + strand, within EX28DRAFT_3749at 428.148 kb on + strand, within EX28DRAFT_3749at 428.200 kb on + strand, within EX28DRAFT_3749at 428.201 kb on - strand, within EX28DRAFT_3749at 428.201 kb on - strand, within EX28DRAFT_3749at 428.332 kb on + strand, within EX28DRAFT_3749at 428.348 kb on + strand, within EX28DRAFT_3749at 428.545 kb on + strand, within EX28DRAFT_3749at 428.594 kb on - strand, within EX28DRAFT_3749at 428.594 kb on - strand, within EX28DRAFT_3749at 428.617 kb on + strand, within EX28DRAFT_3749at 428.618 kb on - strand, within EX28DRAFT_3749at 428.637 kb on + strand, within EX28DRAFT_3749at 428.701 kb on - strand, within EX28DRAFT_3749at 428.718 kb on + strand, within EX28DRAFT_3749at 428.719 kb on - strand, within EX28DRAFT_3749at 428.883 kb on - strand, within EX28DRAFT_3749at 428.893 kb on - strand, within EX28DRAFT_3749at 428.893 kb on - strand, within EX28DRAFT_3749at 428.910 kb on + strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.911 kb on - strand, within EX28DRAFT_3749at 428.914 kb on + strand, within EX28DRAFT_3749at 428.915 kb on - strand, within EX28DRAFT_3749at 428.915 kb on - strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.928 kb on + strand, within EX28DRAFT_3749at 428.933 kb on + strand, within EX28DRAFT_3749at 428.938 kb on - strand, within EX28DRAFT_3749at 429.057 kb on + strand, within EX28DRAFT_3749at 429.081 kb on - strand, within EX28DRAFT_3749at 429.081 kb on - strand, within EX28DRAFT_3749at 429.222 kb on - strand, within EX28DRAFT_3749at 429.274 kb on + strand, within EX28DRAFT_3749at 429.275 kb on - strandat 429.275 kb on - strandat 429.331 kb on + strandat 429.331 kb on + strandat 429.331 kb on + strandat 429.332 kb on - strandat 429.334 kb on + strandat 429.335 kb on - strandat 429.335 kb on - strandat 429.351 kb on + strandat 429.361 kb on + strandat 429.361 kb on + strandat 429.362 kb on - strandat 429.364 kb on - strandat 429.385 kb on + strandat 429.424 kb on + strandat 429.491 kb on - strandat 429.722 kb on + strand, within EX28DRAFT_3750at 429.722 kb on + strand, within EX28DRAFT_3750at 429.722 kb on + strand, within EX28DRAFT_3750at 429.723 kb on - strand, within EX28DRAFT_3750at 429.752 kb on + strand, within EX28DRAFT_3750at 429.753 kb on - strand, within EX28DRAFT_3750at 429.923 kb on + strand, within EX28DRAFT_3750at 429.924 kb on - strand, within EX28DRAFT_3750at 429.924 kb on - strand, within EX28DRAFT_3750at 429.942 kb on + strand, within EX28DRAFT_3750at 429.942 kb on + strand, within EX28DRAFT_3750at 429.943 kb on - strand, within EX28DRAFT_3750at 430.134 kb on + strand, within EX28DRAFT_3750at 430.380 kb on - strand, within EX28DRAFT_3750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
426,994 + EX28DRAFT_3747 0.82 -0.3
426,995 - EX28DRAFT_3747 0.82 +0.5
427,039 + EX28DRAFT_3747 0.88 -1.3
427,040 - EX28DRAFT_3747 0.88 +0.5
427,057 + EX28DRAFT_3747 0.90 +0.5
427,078 - +0.2
427,078 - -0.1
427,126 + +0.6
427,127 - +0.4
427,133 - -0.2
427,855 - +0.8
427,864 - -0.4
427,868 + +0.5
428,002 - +0.2
428,146 + EX28DRAFT_3749 0.15 -0.0
428,146 + EX28DRAFT_3749 0.15 +0.2
428,148 + EX28DRAFT_3749 0.16 +0.4
428,200 + EX28DRAFT_3749 0.19 -1.3
428,201 - EX28DRAFT_3749 0.19 +0.3
428,201 - EX28DRAFT_3749 0.19 +0.2
428,332 + EX28DRAFT_3749 0.28 +0.2
428,348 + EX28DRAFT_3749 0.29 +0.1
428,545 + EX28DRAFT_3749 0.42 -0.2
428,594 - EX28DRAFT_3749 0.45 +0.9
428,594 - EX28DRAFT_3749 0.45 +1.0
428,617 + EX28DRAFT_3749 0.47 +0.5
428,618 - EX28DRAFT_3749 0.47 -1.0
428,637 + EX28DRAFT_3749 0.48 -0.1
428,701 - EX28DRAFT_3749 0.52 -0.7
428,718 + EX28DRAFT_3749 0.53 -1.0
428,719 - EX28DRAFT_3749 0.53 -0.0
428,883 - EX28DRAFT_3749 0.64 +0.2
428,893 - EX28DRAFT_3749 0.65 -0.9
428,893 - EX28DRAFT_3749 0.65 -0.0
428,910 + EX28DRAFT_3749 0.66 +0.0
428,911 - EX28DRAFT_3749 0.66 +1.9
428,911 - EX28DRAFT_3749 0.66 +0.5
428,911 - EX28DRAFT_3749 0.66 +1.5
428,914 + EX28DRAFT_3749 0.66 +0.0
428,915 - EX28DRAFT_3749 0.66 +0.1
428,915 - EX28DRAFT_3749 0.66 +0.4
428,928 + EX28DRAFT_3749 0.67 +1.5
428,928 + EX28DRAFT_3749 0.67 +1.2
428,928 + EX28DRAFT_3749 0.67 -0.3
428,933 + EX28DRAFT_3749 0.67 +0.1
428,938 - EX28DRAFT_3749 0.68 +0.2
429,057 + EX28DRAFT_3749 0.76 +1.6
429,081 - EX28DRAFT_3749 0.77 +1.5
429,081 - EX28DRAFT_3749 0.77 -0.5
429,222 - EX28DRAFT_3749 0.86 +0.5
429,274 + EX28DRAFT_3749 0.90 +0.3
429,275 - -0.3
429,275 - +0.2
429,331 + +0.9
429,331 + +0.1
429,331 + +0.3
429,332 - -0.1
429,334 + -0.3
429,335 - -0.0
429,335 - -0.4
429,351 + +1.4
429,361 + -0.0
429,361 + +0.3
429,362 - -0.1
429,364 - -0.2
429,385 + +1.4
429,424 + -0.2
429,491 - -0.5
429,722 + EX28DRAFT_3750 0.11 -0.1
429,722 + EX28DRAFT_3750 0.11 +0.3
429,722 + EX28DRAFT_3750 0.11 +0.1
429,723 - EX28DRAFT_3750 0.11 -0.8
429,752 + EX28DRAFT_3750 0.14 -1.7
429,753 - EX28DRAFT_3750 0.14 -0.1
429,923 + EX28DRAFT_3750 0.25 -0.1
429,924 - EX28DRAFT_3750 0.25 +0.3
429,924 - EX28DRAFT_3750 0.25 -0.5
429,942 + EX28DRAFT_3750 0.27 +0.4
429,942 + EX28DRAFT_3750 0.27 -0.8
429,943 - EX28DRAFT_3750 0.27 -0.3
430,134 + EX28DRAFT_3750 0.40 -0.4
430,380 - EX28DRAFT_3750 0.57 +0.2

Or see this region's nucleotide sequence