Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3739

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3738 and EX28DRAFT_3739 are separated by 235 nucleotidesEX28DRAFT_3739 and EX28DRAFT_3740 are separated by 49 nucleotidesEX28DRAFT_3740 and EX28DRAFT_3741 overlap by 1 nucleotides EX28DRAFT_3738: EX28DRAFT_3738 - penicillin-binding protein 1B, at 413,510 to 416,035 _3738 EX28DRAFT_3739: EX28DRAFT_3739 - TonB-dependent siderophore receptor, at 416,271 to 418,520 _3739 EX28DRAFT_3740: EX28DRAFT_3740 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 418,570 to 419,367 _3740 EX28DRAFT_3741: EX28DRAFT_3741 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 419,367 to 420,257 _3741 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 415.450 kb on - strand, within EX28DRAFT_3738at 415.503 kb on - strand, within EX28DRAFT_3738at 415.503 kb on - strand, within EX28DRAFT_3738at 415.503 kb on - strand, within EX28DRAFT_3738at 415.504 kb on + strand, within EX28DRAFT_3738at 415.504 kb on + strand, within EX28DRAFT_3738at 415.505 kb on - strand, within EX28DRAFT_3738at 415.737 kb on - strand, within EX28DRAFT_3738at 415.843 kb on + strandat 415.844 kb on - strandat 416.012 kb on - strandat 416.153 kb on + strandat 416.172 kb on + strandat 416.173 kb on - strandat 416.203 kb on - strandat 416.206 kb on - strandat 416.223 kb on - strandat 416.226 kb on - strandat 416.285 kb on + strandat 416.286 kb on - strandat 416.316 kb on - strandat 416.362 kb on - strandat 416.407 kb on + strandat 416.522 kb on + strand, within EX28DRAFT_3739at 416.523 kb on - strand, within EX28DRAFT_3739at 416.523 kb on - strand, within EX28DRAFT_3739at 416.589 kb on + strand, within EX28DRAFT_3739at 416.589 kb on + strand, within EX28DRAFT_3739at 416.590 kb on - strand, within EX28DRAFT_3739at 416.635 kb on - strand, within EX28DRAFT_3739at 416.635 kb on - strand, within EX28DRAFT_3739at 416.635 kb on - strand, within EX28DRAFT_3739at 416.641 kb on - strand, within EX28DRAFT_3739at 416.684 kb on + strand, within EX28DRAFT_3739at 416.684 kb on + strand, within EX28DRAFT_3739at 416.684 kb on + strand, within EX28DRAFT_3739at 416.684 kb on + strand, within EX28DRAFT_3739at 416.685 kb on - strand, within EX28DRAFT_3739at 416.722 kb on - strand, within EX28DRAFT_3739at 416.745 kb on + strand, within EX28DRAFT_3739at 416.745 kb on + strand, within EX28DRAFT_3739at 416.746 kb on - strand, within EX28DRAFT_3739at 416.746 kb on - strand, within EX28DRAFT_3739at 416.746 kb on - strand, within EX28DRAFT_3739at 416.748 kb on - strand, within EX28DRAFT_3739at 416.748 kb on - strand, within EX28DRAFT_3739at 416.748 kb on - strand, within EX28DRAFT_3739at 416.979 kb on - strand, within EX28DRAFT_3739at 417.194 kb on + strand, within EX28DRAFT_3739at 417.194 kb on + strand, within EX28DRAFT_3739at 417.195 kb on - strand, within EX28DRAFT_3739at 417.195 kb on - strand, within EX28DRAFT_3739at 417.195 kb on - strand, within EX28DRAFT_3739at 417.199 kb on - strand, within EX28DRAFT_3739at 417.226 kb on - strand, within EX28DRAFT_3739at 417.251 kb on + strand, within EX28DRAFT_3739at 417.394 kb on - strand, within EX28DRAFT_3739at 417.409 kb on - strand, within EX28DRAFT_3739at 417.409 kb on - strand, within EX28DRAFT_3739at 417.516 kb on - strand, within EX28DRAFT_3739at 417.679 kb on - strand, within EX28DRAFT_3739at 417.825 kb on + strand, within EX28DRAFT_3739at 417.845 kb on - strand, within EX28DRAFT_3739at 417.923 kb on + strand, within EX28DRAFT_3739at 417.936 kb on + strand, within EX28DRAFT_3739at 417.937 kb on - strand, within EX28DRAFT_3739at 417.954 kb on + strand, within EX28DRAFT_3739at 417.954 kb on + strand, within EX28DRAFT_3739at 417.955 kb on - strand, within EX28DRAFT_3739at 417.996 kb on + strand, within EX28DRAFT_3739at 418.013 kb on + strand, within EX28DRAFT_3739at 418.137 kb on + strand, within EX28DRAFT_3739at 418.137 kb on + strand, within EX28DRAFT_3739at 418.138 kb on - strand, within EX28DRAFT_3739at 418.138 kb on - strand, within EX28DRAFT_3739at 418.139 kb on + strand, within EX28DRAFT_3739at 418.139 kb on + strand, within EX28DRAFT_3739at 418.140 kb on - strand, within EX28DRAFT_3739at 418.140 kb on - strand, within EX28DRAFT_3739at 418.143 kb on + strand, within EX28DRAFT_3739at 418.144 kb on - strand, within EX28DRAFT_3739at 418.144 kb on - strand, within EX28DRAFT_3739at 418.144 kb on - strand, within EX28DRAFT_3739at 418.158 kb on + strand, within EX28DRAFT_3739at 418.176 kb on + strand, within EX28DRAFT_3739at 418.233 kb on + strand, within EX28DRAFT_3739at 418.234 kb on - strand, within EX28DRAFT_3739at 418.303 kb on - strandat 418.338 kb on + strandat 418.365 kb on + strandat 418.438 kb on - strandat 418.461 kb on + strandat 418.518 kb on + strandat 418.518 kb on + strandat 418.518 kb on + strandat 418.519 kb on - strandat 418.557 kb on + strandat 418.558 kb on - strandat 418.835 kb on - strand, within EX28DRAFT_3740at 419.218 kb on + strand, within EX28DRAFT_3740at 419.298 kb on + strandat 419.298 kb on + strandat 419.299 kb on - strandat 419.299 kb on - strandat 419.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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415,450 - EX28DRAFT_3738 0.77 +0.6
415,503 - EX28DRAFT_3738 0.79 +0.5
415,503 - EX28DRAFT_3738 0.79 -0.1
415,503 - EX28DRAFT_3738 0.79 +0.5
415,504 + EX28DRAFT_3738 0.79 +0.6
415,504 + EX28DRAFT_3738 0.79 -0.1
415,505 - EX28DRAFT_3738 0.79 -0.3
415,737 - EX28DRAFT_3738 0.88 +0.2
415,843 + +0.2
415,844 - +0.2
416,012 - +0.1
416,153 + +0.3
416,172 + +0.3
416,173 - +0.0
416,203 - +0.3
416,206 - +0.3
416,223 - +0.0
416,226 - -0.2
416,285 + -0.2
416,286 - -0.2
416,316 - -0.2
416,362 - -0.2
416,407 + -0.0
416,522 + EX28DRAFT_3739 0.11 +1.0
416,523 - EX28DRAFT_3739 0.11 +0.1
416,523 - EX28DRAFT_3739 0.11 +0.5
416,589 + EX28DRAFT_3739 0.14 +0.4
416,589 + EX28DRAFT_3739 0.14 -0.7
416,590 - EX28DRAFT_3739 0.14 -0.4
416,635 - EX28DRAFT_3739 0.16 +0.5
416,635 - EX28DRAFT_3739 0.16 -0.8
416,635 - EX28DRAFT_3739 0.16 +1.2
416,641 - EX28DRAFT_3739 0.16 +0.2
416,684 + EX28DRAFT_3739 0.18 +0.6
416,684 + EX28DRAFT_3739 0.18 -0.3
416,684 + EX28DRAFT_3739 0.18 -0.3
416,684 + EX28DRAFT_3739 0.18 +0.3
416,685 - EX28DRAFT_3739 0.18 +0.0
416,722 - EX28DRAFT_3739 0.20 -0.4
416,745 + EX28DRAFT_3739 0.21 +0.5
416,745 + EX28DRAFT_3739 0.21 +0.4
416,746 - EX28DRAFT_3739 0.21 +1.3
416,746 - EX28DRAFT_3739 0.21 +0.2
416,746 - EX28DRAFT_3739 0.21 +0.7
416,748 - EX28DRAFT_3739 0.21 +0.5
416,748 - EX28DRAFT_3739 0.21 -0.1
416,748 - EX28DRAFT_3739 0.21 -0.7
416,979 - EX28DRAFT_3739 0.31 +0.5
417,194 + EX28DRAFT_3739 0.41 +0.2
417,194 + EX28DRAFT_3739 0.41 +0.2
417,195 - EX28DRAFT_3739 0.41 -0.3
417,195 - EX28DRAFT_3739 0.41 +0.2
417,195 - EX28DRAFT_3739 0.41 +1.6
417,199 - EX28DRAFT_3739 0.41 +0.5
417,226 - EX28DRAFT_3739 0.42 +0.3
417,251 + EX28DRAFT_3739 0.44 +0.6
417,394 - EX28DRAFT_3739 0.50 +0.5
417,409 - EX28DRAFT_3739 0.51 +0.7
417,409 - EX28DRAFT_3739 0.51 +0.2
417,516 - EX28DRAFT_3739 0.55 +0.2
417,679 - EX28DRAFT_3739 0.63 +0.2
417,825 + EX28DRAFT_3739 0.69 -0.1
417,845 - EX28DRAFT_3739 0.70 +0.4
417,923 + EX28DRAFT_3739 0.73 +0.4
417,936 + EX28DRAFT_3739 0.74 -0.1
417,937 - EX28DRAFT_3739 0.74 -0.5
417,954 + EX28DRAFT_3739 0.75 -0.8
417,954 + EX28DRAFT_3739 0.75 -0.1
417,955 - EX28DRAFT_3739 0.75 -0.1
417,996 + EX28DRAFT_3739 0.77 -0.1
418,013 + EX28DRAFT_3739 0.77 +0.1
418,137 + EX28DRAFT_3739 0.83 +0.4
418,137 + EX28DRAFT_3739 0.83 -0.3
418,138 - EX28DRAFT_3739 0.83 +0.7
418,138 - EX28DRAFT_3739 0.83 -0.2
418,139 + EX28DRAFT_3739 0.83 -0.4
418,139 + EX28DRAFT_3739 0.83 +0.3
418,140 - EX28DRAFT_3739 0.83 +0.3
418,140 - EX28DRAFT_3739 0.83 -0.3
418,143 + EX28DRAFT_3739 0.83 -0.4
418,144 - EX28DRAFT_3739 0.83 +0.0
418,144 - EX28DRAFT_3739 0.83 +0.4
418,144 - EX28DRAFT_3739 0.83 -0.6
418,158 + EX28DRAFT_3739 0.84 -2.6
418,176 + EX28DRAFT_3739 0.85 +0.2
418,233 + EX28DRAFT_3739 0.87 -0.2
418,234 - EX28DRAFT_3739 0.87 +0.2
418,303 - -0.2
418,338 + +0.1
418,365 + -0.4
418,438 - +0.1
418,461 + +0.4
418,518 + -0.3
418,518 + +0.3
418,518 + +2.4
418,519 - +0.0
418,557 + +0.5
418,558 - -0.0
418,835 - EX28DRAFT_3740 0.33 -0.6
419,218 + EX28DRAFT_3740 0.81 +0.4
419,298 + +1.6
419,298 + -0.1
419,299 - -2.1
419,299 - +1.9
419,299 - +1.0

Or see this region's nucleotide sequence