Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3726

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3724 and EX28DRAFT_3725 overlap by 4 nucleotidesEX28DRAFT_3725 and EX28DRAFT_3726 are separated by 104 nucleotidesEX28DRAFT_3726 and EX28DRAFT_3727 are separated by 62 nucleotides EX28DRAFT_3724: EX28DRAFT_3724 - ABC-type multidrug transport system, ATPase component, at 400,361 to 401,287 _3724 EX28DRAFT_3725: EX28DRAFT_3725 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 401,284 to 402,054 _3725 EX28DRAFT_3726: EX28DRAFT_3726 - Phosphotransferase system, mannose/fructose-specific component IIA, at 402,159 to 402,599 _3726 EX28DRAFT_3727: EX28DRAFT_3727 - Predicted xylanase/chitin deacetylase, at 402,662 to 403,909 _3727 Position (kb) 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 401.164 kb on + strand, within EX28DRAFT_3724at 401.208 kb on + strandat 401.208 kb on + strandat 401.212 kb on + strandat 401.219 kb on - strandat 401.259 kb on + strandat 401.260 kb on - strandat 401.344 kb on - strandat 401.349 kb on + strandat 401.350 kb on - strandat 401.395 kb on + strand, within EX28DRAFT_3725at 401.396 kb on - strand, within EX28DRAFT_3725at 401.451 kb on + strand, within EX28DRAFT_3725at 401.451 kb on + strand, within EX28DRAFT_3725at 401.452 kb on - strand, within EX28DRAFT_3725at 401.452 kb on - strand, within EX28DRAFT_3725at 401.452 kb on - strand, within EX28DRAFT_3725at 401.455 kb on + strand, within EX28DRAFT_3725at 401.455 kb on + strand, within EX28DRAFT_3725at 401.455 kb on + strand, within EX28DRAFT_3725at 401.455 kb on + strand, within EX28DRAFT_3725at 401.456 kb on - strand, within EX28DRAFT_3725at 401.456 kb on - strand, within EX28DRAFT_3725at 401.456 kb on - strand, within EX28DRAFT_3725at 401.457 kb on + strand, within EX28DRAFT_3725at 401.458 kb on - strand, within EX28DRAFT_3725at 401.519 kb on + strand, within EX28DRAFT_3725at 401.519 kb on + strand, within EX28DRAFT_3725at 401.520 kb on - strand, within EX28DRAFT_3725at 401.849 kb on - strand, within EX28DRAFT_3725at 401.908 kb on + strand, within EX28DRAFT_3725at 401.908 kb on + strand, within EX28DRAFT_3725at 401.909 kb on - strand, within EX28DRAFT_3725at 401.992 kb on - strandat 402.005 kb on - strandat 402.102 kb on + strandat 402.147 kb on - strandat 402.158 kb on + strandat 402.158 kb on + strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.159 kb on - strandat 402.212 kb on + strand, within EX28DRAFT_3726at 402.402 kb on - strand, within EX28DRAFT_3726at 402.402 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.435 kb on - strand, within EX28DRAFT_3726at 402.460 kb on - strand, within EX28DRAFT_3726at 402.589 kb on - strandat 402.597 kb on + strandat 402.626 kb on - strandat 402.764 kb on - strandat 402.866 kb on + strand, within EX28DRAFT_3727at 402.866 kb on + strand, within EX28DRAFT_3727at 402.997 kb on + strand, within EX28DRAFT_3727at 402.998 kb on - strand, within EX28DRAFT_3727at 403.020 kb on - strand, within EX28DRAFT_3727at 403.203 kb on - strand, within EX28DRAFT_3727at 403.210 kb on + strand, within EX28DRAFT_3727at 403.210 kb on + strand, within EX28DRAFT_3727at 403.211 kb on - strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.246 kb on + strand, within EX28DRAFT_3727at 403.267 kb on - strand, within EX28DRAFT_3727at 403.267 kb on - strand, within EX28DRAFT_3727at 403.328 kb on + strand, within EX28DRAFT_3727at 403.344 kb on - strand, within EX28DRAFT_3727at 403.388 kb on - strand, within EX28DRAFT_3727at 403.421 kb on + strand, within EX28DRAFT_3727at 403.445 kb on + strand, within EX28DRAFT_3727at 403.469 kb on - strand, within EX28DRAFT_3727at 403.471 kb on + strand, within EX28DRAFT_3727at 403.472 kb on - strand, within EX28DRAFT_3727at 403.472 kb on - strand, within EX28DRAFT_3727

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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401,164 + EX28DRAFT_3724 0.87 -1.4
401,208 + -2.0
401,208 + -2.5
401,212 + -0.1
401,219 - -2.7
401,259 + -2.2
401,260 - -1.3
401,344 - -2.4
401,349 + -0.6
401,350 - -0.9
401,395 + EX28DRAFT_3725 0.14 -1.4
401,396 - EX28DRAFT_3725 0.15 -1.5
401,451 + EX28DRAFT_3725 0.22 -0.8
401,451 + EX28DRAFT_3725 0.22 -1.7
401,452 - EX28DRAFT_3725 0.22 -1.4
401,452 - EX28DRAFT_3725 0.22 -2.4
401,452 - EX28DRAFT_3725 0.22 -2.4
401,455 + EX28DRAFT_3725 0.22 -2.5
401,455 + EX28DRAFT_3725 0.22 -1.5
401,455 + EX28DRAFT_3725 0.22 -0.4
401,455 + EX28DRAFT_3725 0.22 -1.7
401,456 - EX28DRAFT_3725 0.22 -3.2
401,456 - EX28DRAFT_3725 0.22 -2.2
401,456 - EX28DRAFT_3725 0.22 -2.2
401,457 + EX28DRAFT_3725 0.22 -1.9
401,458 - EX28DRAFT_3725 0.23 -2.7
401,519 + EX28DRAFT_3725 0.30 -1.5
401,519 + EX28DRAFT_3725 0.30 -1.8
401,520 - EX28DRAFT_3725 0.31 -1.6
401,849 - EX28DRAFT_3725 0.73 -1.8
401,908 + EX28DRAFT_3725 0.81 -3.2
401,908 + EX28DRAFT_3725 0.81 -2.7
401,909 - EX28DRAFT_3725 0.81 -2.0
401,992 - -2.8
402,005 - -1.4
402,102 + +0.2
402,147 - -0.2
402,158 + +0.1
402,158 + +0.3
402,159 - -0.1
402,159 - +0.9
402,159 - -1.5
402,159 - +0.1
402,212 + EX28DRAFT_3726 0.12 +0.5
402,402 - EX28DRAFT_3726 0.55 +0.4
402,402 - EX28DRAFT_3726 0.55 +0.2
402,435 - EX28DRAFT_3726 0.63 +0.1
402,435 - EX28DRAFT_3726 0.63 +0.8
402,435 - EX28DRAFT_3726 0.63 +0.9
402,460 - EX28DRAFT_3726 0.68 +1.9
402,589 - -0.1
402,597 + +0.1
402,626 - -1.5
402,764 - +1.0
402,866 + EX28DRAFT_3727 0.16 -0.2
402,866 + EX28DRAFT_3727 0.16 +0.3
402,997 + EX28DRAFT_3727 0.27 +0.1
402,998 - EX28DRAFT_3727 0.27 +0.6
403,020 - EX28DRAFT_3727 0.29 -0.4
403,203 - EX28DRAFT_3727 0.43 -0.3
403,210 + EX28DRAFT_3727 0.44 +0.3
403,210 + EX28DRAFT_3727 0.44 -0.6
403,211 - EX28DRAFT_3727 0.44 +0.3
403,246 + EX28DRAFT_3727 0.47 -1.0
403,246 + EX28DRAFT_3727 0.47 -0.3
403,246 + EX28DRAFT_3727 0.47 -0.1
403,246 + EX28DRAFT_3727 0.47 +0.5
403,246 + EX28DRAFT_3727 0.47 +0.3
403,246 + EX28DRAFT_3727 0.47 -0.3
403,246 + EX28DRAFT_3727 0.47 +0.4
403,267 - EX28DRAFT_3727 0.48 -0.4
403,267 - EX28DRAFT_3727 0.48 +0.1
403,328 + EX28DRAFT_3727 0.53 +0.5
403,344 - EX28DRAFT_3727 0.55 +0.4
403,388 - EX28DRAFT_3727 0.58 +0.4
403,421 + EX28DRAFT_3727 0.61 +0.2
403,445 + EX28DRAFT_3727 0.63 +0.0
403,469 - EX28DRAFT_3727 0.65 -0.6
403,471 + EX28DRAFT_3727 0.65 +0.5
403,472 - EX28DRAFT_3727 0.65 -0.5
403,472 - EX28DRAFT_3727 0.65 +0.2

Or see this region's nucleotide sequence