Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3660

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3659 and EX28DRAFT_3660 overlap by 25 nucleotidesEX28DRAFT_3660 and EX28DRAFT_3661 are separated by 168 nucleotides EX28DRAFT_3659: EX28DRAFT_3659 - thiamine ABC transporter, permease protein, at 326,054 to 327,664 _3659 EX28DRAFT_3660: EX28DRAFT_3660 - thiamine ABC transporter, periplasmic binding protein, at 327,640 to 328,623 _3660 EX28DRAFT_3661: EX28DRAFT_3661 - ABC-type uncharacterized transport system, periplasmic component, at 328,792 to 330,447 _3661 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1at 326.870 kb on - strand, within EX28DRAFT_3659at 326.953 kb on - strand, within EX28DRAFT_3659at 326.974 kb on - strand, within EX28DRAFT_3659at 327.052 kb on + strand, within EX28DRAFT_3659at 327.215 kb on - strand, within EX28DRAFT_3659at 327.341 kb on + strand, within EX28DRAFT_3659at 327.627 kb on - strandat 327.670 kb on + strandat 327.671 kb on - strandat 327.769 kb on - strand, within EX28DRAFT_3660at 327.769 kb on - strand, within EX28DRAFT_3660at 327.779 kb on + strand, within EX28DRAFT_3660at 327.903 kb on - strand, within EX28DRAFT_3660at 327.932 kb on + strand, within EX28DRAFT_3660at 327.932 kb on + strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.933 kb on - strand, within EX28DRAFT_3660at 327.936 kb on + strand, within EX28DRAFT_3660at 327.936 kb on + strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.937 kb on - strand, within EX28DRAFT_3660at 327.978 kb on + strand, within EX28DRAFT_3660at 327.978 kb on + strand, within EX28DRAFT_3660at 327.979 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 327.981 kb on - strand, within EX28DRAFT_3660at 328.238 kb on + strand, within EX28DRAFT_3660at 328.253 kb on + strand, within EX28DRAFT_3660at 328.545 kb on - strandat 328.545 kb on - strandat 328.550 kb on + strandat 328.713 kb on + strandat 328.713 kb on + strandat 328.714 kb on - strandat 328.714 kb on - strandat 328.759 kb on + strandat 328.779 kb on + strandat 328.782 kb on + strandat 328.782 kb on + strandat 328.782 kb on + strandat 329.033 kb on + strand, within EX28DRAFT_3661at 329.033 kb on + strand, within EX28DRAFT_3661at 329.094 kb on + strand, within EX28DRAFT_3661at 329.094 kb on + strand, within EX28DRAFT_3661at 329.129 kb on + strand, within EX28DRAFT_3661at 329.130 kb on - strand, within EX28DRAFT_3661at 329.322 kb on - strand, within EX28DRAFT_3661at 329.322 kb on - strand, within EX28DRAFT_3661at 329.349 kb on - strand, within EX28DRAFT_3661at 329.349 kb on - strand, within EX28DRAFT_3661at 329.349 kb on - strand, within EX28DRAFT_3661at 329.438 kb on + strand, within EX28DRAFT_3661at 329.439 kb on - strand, within EX28DRAFT_3661at 329.441 kb on + strand, within EX28DRAFT_3661at 329.441 kb on + strand, within EX28DRAFT_3661at 329.441 kb on + strand, within EX28DRAFT_3661

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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326,870 - EX28DRAFT_3659 0.51 -1.1
326,953 - EX28DRAFT_3659 0.56 +0.2
326,974 - EX28DRAFT_3659 0.57 +0.0
327,052 + EX28DRAFT_3659 0.62 +0.1
327,215 - EX28DRAFT_3659 0.72 -0.1
327,341 + EX28DRAFT_3659 0.80 +0.4
327,627 - -1.0
327,670 + -1.4
327,671 - -0.2
327,769 - EX28DRAFT_3660 0.13 +0.4
327,769 - EX28DRAFT_3660 0.13 +0.0
327,779 + EX28DRAFT_3660 0.14 -0.1
327,903 - EX28DRAFT_3660 0.27 -0.5
327,932 + EX28DRAFT_3660 0.30 -0.1
327,932 + EX28DRAFT_3660 0.30 -0.7
327,933 - EX28DRAFT_3660 0.30 -0.5
327,933 - EX28DRAFT_3660 0.30 -0.1
327,933 - EX28DRAFT_3660 0.30 -1.5
327,933 - EX28DRAFT_3660 0.30 +0.0
327,933 - EX28DRAFT_3660 0.30 +0.0
327,933 - EX28DRAFT_3660 0.30 -0.0
327,933 - EX28DRAFT_3660 0.30 -1.3
327,933 - EX28DRAFT_3660 0.30 -1.0
327,933 - EX28DRAFT_3660 0.30 -0.3
327,936 + EX28DRAFT_3660 0.30 -0.3
327,936 + EX28DRAFT_3660 0.30 -0.6
327,937 - EX28DRAFT_3660 0.30 -0.1
327,937 - EX28DRAFT_3660 0.30 -0.7
327,937 - EX28DRAFT_3660 0.30 -0.3
327,978 + EX28DRAFT_3660 0.34 -0.8
327,978 + EX28DRAFT_3660 0.34 -0.6
327,979 - EX28DRAFT_3660 0.34 +0.1
327,981 - EX28DRAFT_3660 0.35 -0.2
327,981 - EX28DRAFT_3660 0.35 -1.1
327,981 - EX28DRAFT_3660 0.35 +0.3
328,238 + EX28DRAFT_3660 0.61 -0.5
328,253 + EX28DRAFT_3660 0.62 +0.1
328,545 - -0.9
328,545 - -0.2
328,550 + +0.1
328,713 + -0.6
328,713 + -0.7
328,714 - -0.4
328,714 - +0.0
328,759 + -0.6
328,779 + -0.8
328,782 + -0.1
328,782 + -0.3
328,782 + -1.9
329,033 + EX28DRAFT_3661 0.15 +0.3
329,033 + EX28DRAFT_3661 0.15 -0.3
329,094 + EX28DRAFT_3661 0.18 -0.7
329,094 + EX28DRAFT_3661 0.18 -0.8
329,129 + EX28DRAFT_3661 0.20 -0.3
329,130 - EX28DRAFT_3661 0.20 +0.3
329,322 - EX28DRAFT_3661 0.32 -0.1
329,322 - EX28DRAFT_3661 0.32 +0.6
329,349 - EX28DRAFT_3661 0.34 +0.1
329,349 - EX28DRAFT_3661 0.34 +0.3
329,349 - EX28DRAFT_3661 0.34 +0.7
329,438 + EX28DRAFT_3661 0.39 +0.6
329,439 - EX28DRAFT_3661 0.39 -0.3
329,441 + EX28DRAFT_3661 0.39 -0.4
329,441 + EX28DRAFT_3661 0.39 -0.1
329,441 + EX28DRAFT_3661 0.39 +0.1

Or see this region's nucleotide sequence