Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3652 and EX28DRAFT_3653 are separated by 74 nucleotides EX28DRAFT_3653 and EX28DRAFT_3654 are separated by 47 nucleotides EX28DRAFT_3654 and EX28DRAFT_3655 are separated by 10 nucleotides
EX28DRAFT_3652: EX28DRAFT_3652 - DNA polymerase elongation subunit (family B), at 316,848 to 319,205
_3652
EX28DRAFT_3653: EX28DRAFT_3653 - L-ribulose-5-phosphate 4-epimerase, at 319,280 to 319,975
_3653
EX28DRAFT_3654: EX28DRAFT_3654 - L-arabinose isomerase, at 320,023 to 321,525
_3654
EX28DRAFT_3655: EX28DRAFT_3655 - ribulokinase, at 321,536 to 323,245
_3655
Position (kb) 320
321
322 Strain fitness (log2 ratio) -1
0
1 at 319.179 kb on + strand at 319.211 kb on + strand at 319.255 kb on - strand at 319.260 kb on - strand at 319.269 kb on - strand at 319.270 kb on + strand at 319.270 kb on + strand at 319.271 kb on - strand at 319.272 kb on + strand at 319.272 kb on + strand at 319.273 kb on - strand at 319.275 kb on - strand at 319.294 kb on - strand at 319.320 kb on + strand at 319.392 kb on + strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.444 kb on + strand, within EX28DRAFT_3653 at 319.608 kb on + strand, within EX28DRAFT_3653 at 319.609 kb on - strand, within EX28DRAFT_3653 at 319.769 kb on - strand, within EX28DRAFT_3653 at 319.919 kb on - strand at 319.970 kb on + strand at 319.971 kb on - strand at 319.971 kb on - strand at 320.020 kb on + strand at 320.021 kb on - strand at 320.024 kb on + strand at 320.025 kb on - strand at 320.417 kb on + strand, within EX28DRAFT_3654 at 320.417 kb on + strand, within EX28DRAFT_3654 at 320.418 kb on - strand, within EX28DRAFT_3654 at 320.418 kb on - strand, within EX28DRAFT_3654 at 320.516 kb on + strand, within EX28DRAFT_3654 at 320.517 kb on - strand, within EX28DRAFT_3654 at 320.517 kb on - strand, within EX28DRAFT_3654 at 320.522 kb on + strand, within EX28DRAFT_3654 at 321.018 kb on + strand, within EX28DRAFT_3654 at 321.048 kb on + strand, within EX28DRAFT_3654 at 321.282 kb on + strand, within EX28DRAFT_3654 at 321.282 kb on + strand, within EX28DRAFT_3654 at 321.283 kb on - strand, within EX28DRAFT_3654 at 321.312 kb on + strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.321 kb on - strand, within EX28DRAFT_3654 at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.506 kb on + strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.507 kb on - strand at 321.639 kb on + strand at 322.221 kb on + strand, within EX28DRAFT_3655 at 322.222 kb on - strand, within EX28DRAFT_3655 at 322.222 kb on - strand, within EX28DRAFT_3655 at 322.226 kb on - strand, within EX28DRAFT_3655
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 319,179 + +0.4 319,211 + +0.0 319,255 - -0.4 319,260 - -0.1 319,269 - +0.2 319,270 + -0.7 319,270 + -0.4 319,271 - -0.1 319,272 + -0.1 319,272 + +0.5 319,273 - +0.1 319,275 - +0.6 319,294 - +0.5 319,320 + +0.2 319,392 + EX28DRAFT_3653 0.16 -0.2 319,393 - EX28DRAFT_3653 0.16 -0.2 319,393 - EX28DRAFT_3653 0.16 -0.4 319,393 - EX28DRAFT_3653 0.16 -0.1 319,393 - EX28DRAFT_3653 0.16 -1.4 319,444 + EX28DRAFT_3653 0.24 +0.5 319,608 + EX28DRAFT_3653 0.47 +0.1 319,609 - EX28DRAFT_3653 0.47 +0.1 319,769 - EX28DRAFT_3653 0.70 -0.2 319,919 - +1.0 319,970 + +0.4 319,971 - -0.1 319,971 - -0.3 320,020 + +0.2 320,021 - +0.1 320,024 + +0.2 320,025 - +0.0 320,417 + EX28DRAFT_3654 0.26 +0.2 320,417 + EX28DRAFT_3654 0.26 -0.8 320,418 - EX28DRAFT_3654 0.26 +0.4 320,418 - EX28DRAFT_3654 0.26 -0.2 320,516 + EX28DRAFT_3654 0.33 +1.1 320,517 - EX28DRAFT_3654 0.33 +0.6 320,517 - EX28DRAFT_3654 0.33 +0.2 320,522 + EX28DRAFT_3654 0.33 +0.6 321,018 + EX28DRAFT_3654 0.66 -0.7 321,048 + EX28DRAFT_3654 0.68 +1.5 321,282 + EX28DRAFT_3654 0.84 -0.7 321,282 + EX28DRAFT_3654 0.84 -0.2 321,283 - EX28DRAFT_3654 0.84 -1.0 321,312 + EX28DRAFT_3654 0.86 +0.8 321,321 - EX28DRAFT_3654 0.86 -0.5 321,321 - EX28DRAFT_3654 0.86 +0.2 321,321 - EX28DRAFT_3654 0.86 +1.4 321,506 + +0.6 321,506 + +0.4 321,506 + +0.1 321,506 + +0.0 321,506 + -0.5 321,506 + -0.0 321,506 + +0.5 321,506 + -1.0 321,506 + +0.5 321,507 - -0.4 321,507 - +0.6 321,507 - +0.4 321,507 - +0.1 321,507 - +0.8 321,639 + +0.3 322,221 + EX28DRAFT_3655 0.40 -0.2 322,222 - EX28DRAFT_3655 0.40 +0.0 322,222 - EX28DRAFT_3655 0.40 +0.3 322,226 - EX28DRAFT_3655 0.40 +0.6
Or see this region's nucleotide sequence