Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3600

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3599 and EX28DRAFT_3600 are separated by 108 nucleotidesEX28DRAFT_3600 and EX28DRAFT_3601 are separated by 91 nucleotides EX28DRAFT_3599: EX28DRAFT_3599 - zinc-binding alcohol dehydrogenase family protein, at 257,277 to 258,278 _3599 EX28DRAFT_3600: EX28DRAFT_3600 - Transcriptional regulator, at 258,387 to 259,286 _3600 EX28DRAFT_3601: EX28DRAFT_3601 - ATP-binding cassette protein, ChvD family, at 259,378 to 261,045 _3601 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1 2at 257.462 kb on - strand, within EX28DRAFT_3599at 257.476 kb on + strand, within EX28DRAFT_3599at 257.480 kb on + strand, within EX28DRAFT_3599at 257.561 kb on + strand, within EX28DRAFT_3599at 257.561 kb on + strand, within EX28DRAFT_3599at 257.632 kb on + strand, within EX28DRAFT_3599at 257.633 kb on - strand, within EX28DRAFT_3599at 257.694 kb on + strand, within EX28DRAFT_3599at 258.027 kb on - strand, within EX28DRAFT_3599at 258.027 kb on - strand, within EX28DRAFT_3599at 258.180 kb on + strandat 258.319 kb on + strandat 258.319 kb on + strandat 258.320 kb on - strandat 258.321 kb on + strandat 258.322 kb on - strandat 258.393 kb on - strandat 258.812 kb on - strand, within EX28DRAFT_3600at 258.812 kb on - strand, within EX28DRAFT_3600at 258.960 kb on - strand, within EX28DRAFT_3600at 259.052 kb on - strand, within EX28DRAFT_3600at 259.053 kb on + strand, within EX28DRAFT_3600at 259.053 kb on + strand, within EX28DRAFT_3600at 259.118 kb on + strand, within EX28DRAFT_3600at 259.173 kb on - strand, within EX28DRAFT_3600at 259.230 kb on + strandat 259.230 kb on + strandat 259.230 kb on + strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.272 kb on + strandat 259.272 kb on + strandat 259.389 kb on + strandat 259.389 kb on + strandat 259.390 kb on - strandat 259.397 kb on + strandat 259.401 kb on + strandat 259.401 kb on + strandat 259.401 kb on + strandat 259.401 kb on + strandat 259.401 kb on + strandat 259.402 kb on - strandat 259.402 kb on - strandat 259.402 kb on - strandat 259.404 kb on + strandat 259.448 kb on + strandat 259.458 kb on - strandat 259.458 kb on - strandat 259.470 kb on + strandat 259.470 kb on + strandat 259.471 kb on - strandat 259.471 kb on - strandat 259.558 kb on - strand, within EX28DRAFT_3601at 259.767 kb on - strand, within EX28DRAFT_3601at 259.767 kb on - strand, within EX28DRAFT_3601at 259.962 kb on + strand, within EX28DRAFT_3601at 260.055 kb on + strand, within EX28DRAFT_3601at 260.056 kb on - strand, within EX28DRAFT_3601at 260.191 kb on - strand, within EX28DRAFT_3601at 260.247 kb on + strand, within EX28DRAFT_3601at 260.247 kb on + strand, within EX28DRAFT_3601

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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257,462 - EX28DRAFT_3599 0.18 -0.4
257,476 + EX28DRAFT_3599 0.20 +0.1
257,480 + EX28DRAFT_3599 0.20 -0.6
257,561 + EX28DRAFT_3599 0.28 +0.1
257,561 + EX28DRAFT_3599 0.28 -0.4
257,632 + EX28DRAFT_3599 0.35 -0.6
257,633 - EX28DRAFT_3599 0.36 -0.8
257,694 + EX28DRAFT_3599 0.42 +0.6
258,027 - EX28DRAFT_3599 0.75 -0.4
258,027 - EX28DRAFT_3599 0.75 -0.4
258,180 + -0.0
258,319 + +0.0
258,319 + -0.7
258,320 - +0.1
258,321 + -1.1
258,322 - +0.1
258,393 - -0.2
258,812 - EX28DRAFT_3600 0.47 +2.1
258,812 - EX28DRAFT_3600 0.47 -0.1
258,960 - EX28DRAFT_3600 0.64 -0.1
259,052 - EX28DRAFT_3600 0.74 +0.9
259,053 + EX28DRAFT_3600 0.74 +0.1
259,053 + EX28DRAFT_3600 0.74 +0.8
259,118 + EX28DRAFT_3600 0.81 +0.0
259,173 - EX28DRAFT_3600 0.87 -0.0
259,230 + -0.4
259,230 + +0.2
259,230 + -0.1
259,231 - +1.2
259,231 - -0.4
259,231 - -0.7
259,231 - -0.0
259,231 - -0.2
259,231 - +0.2
259,231 - +1.2
259,231 - -0.2
259,231 - -0.6
259,231 - +0.3
259,272 + -0.3
259,272 + +0.4
259,389 + -0.7
259,389 + -0.2
259,390 - -0.1
259,397 + -0.1
259,401 + +0.6
259,401 + +0.2
259,401 + -0.3
259,401 + -0.3
259,401 + -0.2
259,402 - +0.6
259,402 - -0.2
259,402 - +0.0
259,404 + -0.1
259,448 + -0.3
259,458 - -0.2
259,458 - -2.2
259,470 + -1.1
259,470 + -1.0
259,471 - -0.9
259,471 - +0.9
259,558 - EX28DRAFT_3601 0.11 -1.3
259,767 - EX28DRAFT_3601 0.23 -0.1
259,767 - EX28DRAFT_3601 0.23 -0.4
259,962 + EX28DRAFT_3601 0.35 -0.6
260,055 + EX28DRAFT_3601 0.41 -0.6
260,056 - EX28DRAFT_3601 0.41 +0.5
260,191 - EX28DRAFT_3601 0.49 -0.6
260,247 + EX28DRAFT_3601 0.52 +0.3
260,247 + EX28DRAFT_3601 0.52 -0.8

Or see this region's nucleotide sequence