Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3573 and EX28DRAFT_3574 are separated by 254 nucleotides EX28DRAFT_3574 and EX28DRAFT_3575 are separated by 41 nucleotides EX28DRAFT_3575 and EX28DRAFT_3576 are separated by 33 nucleotides EX28DRAFT_3576 and EX28DRAFT_3577 are separated by 33 nucleotides EX28DRAFT_3577 and EX28DRAFT_3578 are separated by 28 nucleotides EX28DRAFT_3578 and EX28DRAFT_3579 are separated by 172 nucleotides
EX28DRAFT_3573: EX28DRAFT_3573 - diguanylate cyclase (GGDEF) domain, at 234,964 to 236,028
_3573
EX28DRAFT_3574: EX28DRAFT_3574 - Protein of unknown function (DUF1435), at 236,283 to 236,513
_3574
EX28DRAFT_3575: EX28DRAFT_3575 - tRNA, at 236,555 to 236,640
_3575
EX28DRAFT_3576: EX28DRAFT_3576 - tRNA, at 236,674 to 236,759
_3576
EX28DRAFT_3577: EX28DRAFT_3577 - tRNA, at 236,793 to 236,879
_3577
EX28DRAFT_3578: EX28DRAFT_3578 - tRNA, at 236,908 to 236,994
_3578
EX28DRAFT_3579: EX28DRAFT_3579 - 16S RNA G1207 methylase RsmC, at 237,167 to 238,195
_3579
Position (kb) 236
237 Strain fitness (log2 ratio) -1
0
1 at 235.317 kb on + strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.434 kb on + strand, within EX28DRAFT_3573 at 235.436 kb on + strand, within EX28DRAFT_3573 at 235.437 kb on - strand, within EX28DRAFT_3573 at 235.586 kb on + strand, within EX28DRAFT_3573 at 235.604 kb on - strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.819 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.888 kb on - strand, within EX28DRAFT_3573 at 235.901 kb on - strand, within EX28DRAFT_3573 at 235.964 kb on - strand at 236.065 kb on + strand at 236.467 kb on + strand, within EX28DRAFT_3574 at 236.546 kb on + strand at 236.547 kb on - strand at 236.552 kb on - strand at 236.552 kb on - strand at 236.552 kb on - strand at 236.599 kb on - strand, within EX28DRAFT_3575 at 236.851 kb on - strand, within EX28DRAFT_3577 at 236.894 kb on - strand at 236.894 kb on - strand at 236.907 kb on - strand at 236.907 kb on - strand at 237.017 kb on - strand at 237.168 kb on + strand at 237.316 kb on + strand, within EX28DRAFT_3579 at 237.400 kb on + strand, within EX28DRAFT_3579 at 237.401 kb on - strand, within EX28DRAFT_3579 at 237.497 kb on + strand, within EX28DRAFT_3579
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 235,317 + EX28DRAFT_3573 0.33 +0.5 235,318 - EX28DRAFT_3573 0.33 +0.0 235,318 - EX28DRAFT_3573 0.33 +0.9 235,337 + EX28DRAFT_3573 0.35 -0.1 235,337 + EX28DRAFT_3573 0.35 -0.3 235,338 - EX28DRAFT_3573 0.35 -0.1 235,338 - EX28DRAFT_3573 0.35 +0.0 235,434 + EX28DRAFT_3573 0.44 +0.2 235,436 + EX28DRAFT_3573 0.44 +0.1 235,437 - EX28DRAFT_3573 0.44 +0.2 235,586 + EX28DRAFT_3573 0.58 +1.7 235,604 - EX28DRAFT_3573 0.60 +0.9 235,605 + EX28DRAFT_3573 0.60 -1.3 235,605 + EX28DRAFT_3573 0.60 +0.5 235,660 - EX28DRAFT_3573 0.65 -1.0 235,660 - EX28DRAFT_3573 0.65 -1.1 235,730 + EX28DRAFT_3573 0.72 -0.0 235,730 + EX28DRAFT_3573 0.72 +0.2 235,818 + EX28DRAFT_3573 0.80 +0.4 235,818 + EX28DRAFT_3573 0.80 +0.6 235,819 - EX28DRAFT_3573 0.80 +0.4 235,888 - EX28DRAFT_3573 0.87 +0.6 235,888 - EX28DRAFT_3573 0.87 +0.2 235,888 - EX28DRAFT_3573 0.87 -0.3 235,901 - EX28DRAFT_3573 0.88 -0.0 235,964 - -0.4 236,065 + +0.0 236,467 + EX28DRAFT_3574 0.80 +0.8 236,546 + -0.6 236,547 - +0.4 236,552 - +0.2 236,552 - -0.1 236,552 - +0.2 236,599 - EX28DRAFT_3575 0.51 +0.1 236,851 - EX28DRAFT_3577 0.67 +0.9 236,894 - +1.1 236,894 - +0.3 236,907 - +0.6 236,907 - +0.3 237,017 - +0.5 237,168 + -0.2 237,316 + EX28DRAFT_3579 0.14 +0.3 237,400 + EX28DRAFT_3579 0.23 +0.7 237,401 - EX28DRAFT_3579 0.23 -0.3 237,497 + EX28DRAFT_3579 0.32 +0.1
Or see this region's nucleotide sequence