Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3553 and EX28DRAFT_3554 overlap by 10 nucleotides EX28DRAFT_3554 and EX28DRAFT_3555 overlap by 20 nucleotides EX28DRAFT_3555 and EX28DRAFT_3556 are separated by 2 nucleotides
EX28DRAFT_3553: EX28DRAFT_3553 - Uncharacterized secreted protein, at 216,702 to 217,658
_3553
EX28DRAFT_3554: EX28DRAFT_3554 - P pilus assembly protein, porin PapC, at 217,649 to 219,877
_3554
EX28DRAFT_3555: EX28DRAFT_3555 - P pilus assembly protein, chaperone PapD, at 219,858 to 220,634
_3555
EX28DRAFT_3556: EX28DRAFT_3556 - Uncharacterized secreted protein, at 220,637 to 221,131
_3556
Position (kb) 217
218
219
220 Strain fitness (log2 ratio) -1
0
1
2 at 216.788 kb on - strand at 217.055 kb on + strand, within EX28DRAFT_3553 at 217.078 kb on + strand, within EX28DRAFT_3553 at 217.078 kb on + strand, within EX28DRAFT_3553 at 217.213 kb on + strand, within EX28DRAFT_3553 at 217.213 kb on + strand, within EX28DRAFT_3553 at 217.214 kb on - strand, within EX28DRAFT_3553 at 217.214 kb on - strand, within EX28DRAFT_3553 at 217.219 kb on + strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.220 kb on - strand, within EX28DRAFT_3553 at 217.222 kb on + strand, within EX28DRAFT_3553 at 217.222 kb on + strand, within EX28DRAFT_3553 at 217.399 kb on + strand, within EX28DRAFT_3553 at 217.400 kb on - strand, within EX28DRAFT_3553 at 217.568 kb on + strand at 217.569 kb on - strand at 217.636 kb on - strand at 217.682 kb on - strand at 217.780 kb on + strand at 217.781 kb on - strand at 217.901 kb on - strand, within EX28DRAFT_3554 at 217.913 kb on + strand, within EX28DRAFT_3554 at 218.140 kb on - strand, within EX28DRAFT_3554 at 218.264 kb on + strand, within EX28DRAFT_3554 at 218.265 kb on - strand, within EX28DRAFT_3554 at 218.466 kb on + strand, within EX28DRAFT_3554 at 218.524 kb on - strand, within EX28DRAFT_3554 at 218.533 kb on + strand, within EX28DRAFT_3554 at 218.533 kb on + strand, within EX28DRAFT_3554 at 218.928 kb on + strand, within EX28DRAFT_3554 at 218.949 kb on + strand, within EX28DRAFT_3554 at 218.950 kb on - strand, within EX28DRAFT_3554 at 219.035 kb on + strand, within EX28DRAFT_3554 at 219.035 kb on + strand, within EX28DRAFT_3554 at 219.169 kb on - strand, within EX28DRAFT_3554 at 219.282 kb on - strand, within EX28DRAFT_3554 at 219.352 kb on + strand, within EX28DRAFT_3554 at 219.519 kb on + strand, within EX28DRAFT_3554 at 219.539 kb on - strand, within EX28DRAFT_3554 at 219.540 kb on + strand, within EX28DRAFT_3554 at 219.842 kb on + strand at 219.842 kb on + strand at 219.843 kb on - strand at 219.955 kb on + strand, within EX28DRAFT_3555 at 220.030 kb on + strand, within EX28DRAFT_3555 at 220.046 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.101 kb on + strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.102 kb on - strand, within EX28DRAFT_3555 at 220.205 kb on + strand, within EX28DRAFT_3555 at 220.340 kb on + strand, within EX28DRAFT_3555 at 220.343 kb on + strand, within EX28DRAFT_3555 at 220.344 kb on - strand, within EX28DRAFT_3555 at 220.451 kb on - strand, within EX28DRAFT_3555 at 220.490 kb on + strand, within EX28DRAFT_3555 at 220.641 kb on + strand at 220.652 kb on + strand at 220.671 kb on + strand at 220.672 kb on - strand at 220.672 kb on - strand at 220.720 kb on - strand, within EX28DRAFT_3556
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 216,788 - -1.0 217,055 + EX28DRAFT_3553 0.37 -0.3 217,078 + EX28DRAFT_3553 0.39 +0.0 217,078 + EX28DRAFT_3553 0.39 -0.3 217,213 + EX28DRAFT_3553 0.53 +0.4 217,213 + EX28DRAFT_3553 0.53 -0.7 217,214 - EX28DRAFT_3553 0.54 -0.6 217,214 - EX28DRAFT_3553 0.54 +2.3 217,219 + EX28DRAFT_3553 0.54 -1.0 217,220 - EX28DRAFT_3553 0.54 -0.2 217,220 - EX28DRAFT_3553 0.54 -0.6 217,220 - EX28DRAFT_3553 0.54 +0.0 217,222 + EX28DRAFT_3553 0.54 +0.5 217,222 + EX28DRAFT_3553 0.54 +0.1 217,399 + EX28DRAFT_3553 0.73 +0.6 217,400 - EX28DRAFT_3553 0.73 +0.4 217,568 + -0.5 217,569 - +0.3 217,636 - +0.5 217,682 - +0.7 217,780 + +0.2 217,781 - +0.0 217,901 - EX28DRAFT_3554 0.11 +0.0 217,913 + EX28DRAFT_3554 0.12 +0.4 218,140 - EX28DRAFT_3554 0.22 +0.4 218,264 + EX28DRAFT_3554 0.28 -0.2 218,265 - EX28DRAFT_3554 0.28 -0.1 218,466 + EX28DRAFT_3554 0.37 +0.0 218,524 - EX28DRAFT_3554 0.39 +0.9 218,533 + EX28DRAFT_3554 0.40 +0.1 218,533 + EX28DRAFT_3554 0.40 -0.4 218,928 + EX28DRAFT_3554 0.57 +0.1 218,949 + EX28DRAFT_3554 0.58 +0.1 218,950 - EX28DRAFT_3554 0.58 +0.0 219,035 + EX28DRAFT_3554 0.62 -0.8 219,035 + EX28DRAFT_3554 0.62 +1.1 219,169 - EX28DRAFT_3554 0.68 +1.1 219,282 - EX28DRAFT_3554 0.73 +0.9 219,352 + EX28DRAFT_3554 0.76 +0.7 219,519 + EX28DRAFT_3554 0.84 +0.1 219,539 - EX28DRAFT_3554 0.85 +0.5 219,540 + EX28DRAFT_3554 0.85 -0.7 219,842 + -0.2 219,842 + +0.5 219,843 - -0.5 219,955 + EX28DRAFT_3555 0.12 +0.4 220,030 + EX28DRAFT_3555 0.22 +0.2 220,046 + EX28DRAFT_3555 0.24 +0.1 220,101 + EX28DRAFT_3555 0.31 +0.1 220,101 + EX28DRAFT_3555 0.31 +0.1 220,101 + EX28DRAFT_3555 0.31 -1.1 220,102 - EX28DRAFT_3555 0.31 -0.3 220,102 - EX28DRAFT_3555 0.31 -0.5 220,102 - EX28DRAFT_3555 0.31 -0.5 220,102 - EX28DRAFT_3555 0.31 +0.5 220,102 - EX28DRAFT_3555 0.31 -0.4 220,102 - EX28DRAFT_3555 0.31 -0.2 220,205 + EX28DRAFT_3555 0.45 +0.0 220,340 + EX28DRAFT_3555 0.62 -0.3 220,343 + EX28DRAFT_3555 0.62 +0.5 220,344 - EX28DRAFT_3555 0.63 -0.5 220,451 - EX28DRAFT_3555 0.76 -1.1 220,490 + EX28DRAFT_3555 0.81 +0.1 220,641 + +0.3 220,652 + -0.1 220,671 + +1.4 220,672 - -0.1 220,672 - +0.4 220,720 - EX28DRAFT_3556 0.17 +0.7
Or see this region's nucleotide sequence