Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3446 and EX28DRAFT_3447 are separated by 85 nucleotides EX28DRAFT_3447 and EX28DRAFT_3448 are separated by 73 nucleotides EX28DRAFT_3448 and EX28DRAFT_3449 are separated by 71 nucleotides EX28DRAFT_3449 and EX28DRAFT_3450 are separated by 47 nucleotides
EX28DRAFT_3446: EX28DRAFT_3446 - aspartate carbamoyltransferase (EC 2.1.3.2), at 118,941 to 119,873
_3446
EX28DRAFT_3447: EX28DRAFT_3447 - PyrBI operon leader peptide, at 119,959 to 120,039
_3447
EX28DRAFT_3448: EX28DRAFT_3448 - transcriptional regulator, ArgR family, at 120,113 to 120,601
_3448
EX28DRAFT_3449: EX28DRAFT_3449 - Predicted membrane protein, at 120,673 to 122,076
_3449
EX28DRAFT_3450: EX28DRAFT_3450 - ornithine carbamoyltransferase, at 122,124 to 123,128
_3450
Position (kb) 120
121
122
123 Strain fitness (log2 ratio) -1
0
1
2 at 119.878 kb on - strand at 120.043 kb on - strand at 120.043 kb on - strand at 120.085 kb on - strand at 120.105 kb on + strand at 120.111 kb on + strand at 120.146 kb on - strand at 120.193 kb on + strand, within EX28DRAFT_3448 at 120.247 kb on + strand, within EX28DRAFT_3448 at 120.248 kb on - strand, within EX28DRAFT_3448 at 120.281 kb on - strand, within EX28DRAFT_3448 at 120.293 kb on - strand, within EX28DRAFT_3448 at 120.337 kb on + strand, within EX28DRAFT_3448 at 120.381 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.513 kb on + strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.514 kb on - strand, within EX28DRAFT_3448 at 120.554 kb on + strand at 120.554 kb on + strand at 120.555 kb on - strand at 120.555 kb on - strand at 120.555 kb on - strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.592 kb on + strand at 120.617 kb on - strand at 120.761 kb on + strand at 120.761 kb on + strand at 120.971 kb on + strand, within EX28DRAFT_3449 at 121.637 kb on + strand, within EX28DRAFT_3449 at 121.637 kb on + strand, within EX28DRAFT_3449 at 122.049 kb on - strand at 122.088 kb on + strand at 122.126 kb on - strand at 122.366 kb on - strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.417 kb on + strand, within EX28DRAFT_3450 at 122.644 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.824 kb on + strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.825 kb on - strand, within EX28DRAFT_3450 at 122.868 kb on - strand, within EX28DRAFT_3450 at 122.899 kb on + strand, within EX28DRAFT_3450
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 119,878 - -0.1 120,043 - -0.3 120,043 - +1.1 120,085 - +0.4 120,105 + -0.3 120,111 + +0.8 120,146 - -0.1 120,193 + EX28DRAFT_3448 0.16 -0.9 120,247 + EX28DRAFT_3448 0.27 -0.4 120,248 - EX28DRAFT_3448 0.28 +0.2 120,281 - EX28DRAFT_3448 0.34 -0.5 120,293 - EX28DRAFT_3448 0.37 +0.1 120,337 + EX28DRAFT_3448 0.46 +0.2 120,381 + EX28DRAFT_3448 0.55 -0.9 120,513 + EX28DRAFT_3448 0.82 -0.6 120,513 + EX28DRAFT_3448 0.82 +0.4 120,513 + EX28DRAFT_3448 0.82 +0.0 120,513 + EX28DRAFT_3448 0.82 +0.1 120,514 - EX28DRAFT_3448 0.82 -0.3 120,514 - EX28DRAFT_3448 0.82 +0.7 120,514 - EX28DRAFT_3448 0.82 -0.5 120,554 + -0.2 120,554 + -1.1 120,555 - +0.1 120,555 - +0.3 120,555 - +0.1 120,592 + +0.4 120,592 + +0.3 120,592 + +0.9 120,592 + +0.2 120,617 - +0.6 120,761 + +0.2 120,761 + +0.3 120,971 + EX28DRAFT_3449 0.21 +1.9 121,637 + EX28DRAFT_3449 0.69 -1.4 121,637 + EX28DRAFT_3449 0.69 -1.2 122,049 - +1.0 122,088 + -0.2 122,126 - -0.1 122,366 - EX28DRAFT_3450 0.24 -0.4 122,417 + EX28DRAFT_3450 0.29 -0.0 122,417 + EX28DRAFT_3450 0.29 -0.9 122,644 + EX28DRAFT_3450 0.52 -0.9 122,824 + EX28DRAFT_3450 0.70 -0.7 122,824 + EX28DRAFT_3450 0.70 -0.1 122,824 + EX28DRAFT_3450 0.70 +0.9 122,824 + EX28DRAFT_3450 0.70 -0.1 122,824 + EX28DRAFT_3450 0.70 +0.1 122,825 - EX28DRAFT_3450 0.70 +0.5 122,825 - EX28DRAFT_3450 0.70 +0.7 122,825 - EX28DRAFT_3450 0.70 +0.2 122,868 - EX28DRAFT_3450 0.74 +0.7 122,899 + EX28DRAFT_3450 0.77 -0.2
Or see this region's nucleotide sequence