Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3433 and EX28DRAFT_3434 are separated by 77 nucleotides EX28DRAFT_3434 and EX28DRAFT_3435 overlap by 11 nucleotides EX28DRAFT_3435 and EX28DRAFT_3436 are separated by 3 nucleotides EX28DRAFT_3436 and EX28DRAFT_3437 are separated by 97 nucleotides
EX28DRAFT_3433: EX28DRAFT_3433 - Transcriptional antiterminator, at 102,489 to 104,399
_3433
EX28DRAFT_3434: EX28DRAFT_3434 - addiction module antitoxin, RelB/DinJ family, at 104,477 to 104,719
_3434
EX28DRAFT_3435: EX28DRAFT_3435 - addiction module toxin, RelE/StbE family, at 104,709 to 104,993
_3435
EX28DRAFT_3436: EX28DRAFT_3436 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 104,997 to 105,461
_3436
EX28DRAFT_3437: EX28DRAFT_3437 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 105,559 to 107,697
_3437
Position (kb) 104
105 Strain fitness (log2 ratio) -2
-1
0
1 at 103.906 kb on - strand, within EX28DRAFT_3433 at 103.967 kb on + strand, within EX28DRAFT_3433 at 103.967 kb on + strand, within EX28DRAFT_3433 at 103.971 kb on + strand, within EX28DRAFT_3433 at 103.971 kb on + strand, within EX28DRAFT_3433 at 104.179 kb on + strand, within EX28DRAFT_3433 at 104.184 kb on + strand, within EX28DRAFT_3433 at 104.184 kb on + strand, within EX28DRAFT_3433 at 104.187 kb on - strand, within EX28DRAFT_3433 at 104.339 kb on + strand at 104.465 kb on - strand at 104.476 kb on - strand at 104.586 kb on - strand, within EX28DRAFT_3434 at 104.630 kb on - strand, within EX28DRAFT_3434 at 104.696 kb on - strand at 104.696 kb on - strand at 104.701 kb on + strand at 104.715 kb on + strand at 104.716 kb on - strand at 104.773 kb on + strand, within EX28DRAFT_3435 at 104.774 kb on - strand, within EX28DRAFT_3435 at 104.785 kb on + strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.786 kb on - strand, within EX28DRAFT_3435 at 104.926 kb on + strand, within EX28DRAFT_3435 at 104.946 kb on - strand, within EX28DRAFT_3435 at 104.991 kb on + strand at 104.992 kb on - strand at 104.995 kb on + strand at 105.016 kb on - strand at 105.058 kb on - strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.140 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.142 kb on + strand, within EX28DRAFT_3436 at 105.143 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.162 kb on - strand, within EX28DRAFT_3436 at 105.442 kb on + strand at 105.442 kb on + strand at 105.445 kb on + strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.446 kb on - strand at 105.462 kb on - strand at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.981 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437 at 105.984 kb on - strand, within EX28DRAFT_3437
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 103,906 - EX28DRAFT_3433 0.74 +0.1 103,967 + EX28DRAFT_3433 0.77 +1.3 103,967 + EX28DRAFT_3433 0.77 +0.1 103,971 + EX28DRAFT_3433 0.78 -0.5 103,971 + EX28DRAFT_3433 0.78 -0.2 104,179 + EX28DRAFT_3433 0.88 +0.5 104,184 + EX28DRAFT_3433 0.89 +0.3 104,184 + EX28DRAFT_3433 0.89 +0.0 104,187 - EX28DRAFT_3433 0.89 -0.3 104,339 + -0.2 104,465 - +0.7 104,476 - -0.1 104,586 - EX28DRAFT_3434 0.45 -0.5 104,630 - EX28DRAFT_3434 0.63 +0.1 104,696 - +0.3 104,696 - -0.1 104,701 + +0.2 104,715 + +1.0 104,716 - -0.3 104,773 + EX28DRAFT_3435 0.22 -0.0 104,774 - EX28DRAFT_3435 0.23 -0.1 104,785 + EX28DRAFT_3435 0.27 -0.1 104,786 - EX28DRAFT_3435 0.27 -1.4 104,786 - EX28DRAFT_3435 0.27 +0.4 104,926 + EX28DRAFT_3435 0.76 -0.3 104,946 - EX28DRAFT_3435 0.83 -0.4 104,991 + -0.2 104,992 - -0.2 104,995 + -1.8 105,016 - -0.2 105,058 - EX28DRAFT_3436 0.13 -0.5 105,140 + EX28DRAFT_3436 0.31 -0.4 105,140 + EX28DRAFT_3436 0.31 +0.0 105,142 + EX28DRAFT_3436 0.31 -0.0 105,142 + EX28DRAFT_3436 0.31 -0.4 105,143 - EX28DRAFT_3436 0.31 -0.5 105,162 - EX28DRAFT_3436 0.35 -0.1 105,162 - EX28DRAFT_3436 0.35 +0.4 105,162 - EX28DRAFT_3436 0.35 +0.3 105,442 + +0.2 105,442 + -0.3 105,445 + +0.7 105,446 - +0.4 105,446 - +0.5 105,446 - +0.2 105,462 - -0.7 105,981 - EX28DRAFT_3437 0.20 -0.5 105,981 - EX28DRAFT_3437 0.20 +1.1 105,981 - EX28DRAFT_3437 0.20 +1.0 105,984 - EX28DRAFT_3437 0.20 -0.2 105,984 - EX28DRAFT_3437 0.20 -0.2
Or see this region's nucleotide sequence