Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3432

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3430 and EX28DRAFT_3431 overlap by 4 nucleotidesEX28DRAFT_3431 and EX28DRAFT_3432 are separated by 83 nucleotidesEX28DRAFT_3432 and EX28DRAFT_3433 are separated by 19 nucleotides EX28DRAFT_3430: EX28DRAFT_3430 - uncharacterized pyridoxal phosphate-dependent enzyme, at 99,394 to 100,512 _3430 EX28DRAFT_3431: EX28DRAFT_3431 - conserved hypothetical protein EF_0839/AHA_3917, at 100,509 to 101,249 _3431 EX28DRAFT_3432: EX28DRAFT_3432 - 3-carboxymuconate cyclase, at 101,333 to 102,469 _3432 EX28DRAFT_3433: EX28DRAFT_3433 - Transcriptional antiterminator, at 102,489 to 104,399 _3433 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1at 100.378 kb on + strand, within EX28DRAFT_3430at 100.387 kb on + strand, within EX28DRAFT_3430at 100.388 kb on - strand, within EX28DRAFT_3430at 100.388 kb on - strand, within EX28DRAFT_3430at 100.399 kb on + strand, within EX28DRAFT_3430at 100.490 kb on + strandat 100.677 kb on + strand, within EX28DRAFT_3431at 100.678 kb on - strand, within EX28DRAFT_3431at 100.743 kb on - strand, within EX28DRAFT_3431at 100.989 kb on + strand, within EX28DRAFT_3431at 100.990 kb on - strand, within EX28DRAFT_3431at 100.990 kb on - strand, within EX28DRAFT_3431at 101.101 kb on - strand, within EX28DRAFT_3431at 101.157 kb on - strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.160 kb on + strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.161 kb on - strand, within EX28DRAFT_3431at 101.214 kb on - strandat 101.214 kb on - strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.247 kb on + strandat 101.248 kb on - strandat 101.248 kb on - strandat 101.250 kb on + strandat 101.420 kb on + strandat 101.420 kb on + strandat 101.421 kb on - strandat 101.421 kb on - strandat 101.421 kb on - strandat 101.486 kb on - strand, within EX28DRAFT_3432at 101.552 kb on + strand, within EX28DRAFT_3432at 101.660 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.691 kb on + strand, within EX28DRAFT_3432at 101.692 kb on - strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.705 kb on + strand, within EX28DRAFT_3432at 101.706 kb on - strand, within EX28DRAFT_3432at 101.737 kb on + strand, within EX28DRAFT_3432at 101.894 kb on + strand, within EX28DRAFT_3432at 101.931 kb on - strand, within EX28DRAFT_3432at 102.077 kb on - strand, within EX28DRAFT_3432at 102.091 kb on + strand, within EX28DRAFT_3432at 102.115 kb on - strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.209 kb on + strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.210 kb on - strand, within EX28DRAFT_3432at 102.348 kb on - strand, within EX28DRAFT_3432at 102.348 kb on - strand, within EX28DRAFT_3432at 102.426 kb on - strandat 102.468 kb on - strandat 102.474 kb on + strandat 102.474 kb on + strandat 102.474 kb on + strandat 102.512 kb on - strandat 102.605 kb on + strandat 102.651 kb on - strandat 102.651 kb on - strandat 102.741 kb on - strand, within EX28DRAFT_3433at 102.809 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.383 kb on + strand, within EX28DRAFT_3433at 103.384 kb on - strand, within EX28DRAFT_3433at 103.384 kb on - strand, within EX28DRAFT_3433at 103.410 kb on + strand, within EX28DRAFT_3433at 103.410 kb on + strand, within EX28DRAFT_3433at 103.413 kb on - strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.416 kb on + strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433at 103.417 kb on - strand, within EX28DRAFT_3433

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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100,378 + EX28DRAFT_3430 0.88 -0.1
100,387 + EX28DRAFT_3430 0.89 -0.2
100,388 - EX28DRAFT_3430 0.89 -0.3
100,388 - EX28DRAFT_3430 0.89 +0.2
100,399 + EX28DRAFT_3430 0.90 -0.0
100,490 + -1.2
100,677 + EX28DRAFT_3431 0.23 -0.4
100,678 - EX28DRAFT_3431 0.23 -2.8
100,743 - EX28DRAFT_3431 0.32 -0.7
100,989 + EX28DRAFT_3431 0.65 -1.1
100,990 - EX28DRAFT_3431 0.65 +0.1
100,990 - EX28DRAFT_3431 0.65 -1.4
101,101 - EX28DRAFT_3431 0.80 +0.6
101,157 - EX28DRAFT_3431 0.87 -1.0
101,160 + EX28DRAFT_3431 0.88 -0.1
101,160 + EX28DRAFT_3431 0.88 +0.6
101,160 + EX28DRAFT_3431 0.88 +0.5
101,161 - EX28DRAFT_3431 0.88 +0.5
101,161 - EX28DRAFT_3431 0.88 -0.3
101,161 - EX28DRAFT_3431 0.88 -0.0
101,214 - -0.1
101,214 - -0.6
101,247 + -0.6
101,247 + +0.0
101,247 + +0.0
101,248 - -1.2
101,248 - +0.3
101,250 + +0.3
101,420 + +0.0
101,420 + +1.0
101,421 - +0.5
101,421 - +0.8
101,421 - -0.4
101,486 - EX28DRAFT_3432 0.13 +0.2
101,552 + EX28DRAFT_3432 0.19 -0.9
101,660 + EX28DRAFT_3432 0.29 -0.0
101,691 + EX28DRAFT_3432 0.31 +0.4
101,691 + EX28DRAFT_3432 0.31 -0.5
101,691 + EX28DRAFT_3432 0.31 -0.4
101,692 - EX28DRAFT_3432 0.32 +0.6
101,705 + EX28DRAFT_3432 0.33 -0.1
101,705 + EX28DRAFT_3432 0.33 +0.1
101,705 + EX28DRAFT_3432 0.33 -0.2
101,706 - EX28DRAFT_3432 0.33 -0.1
101,737 + EX28DRAFT_3432 0.36 +0.2
101,894 + EX28DRAFT_3432 0.49 -0.1
101,931 - EX28DRAFT_3432 0.53 +1.4
102,077 - EX28DRAFT_3432 0.65 +0.6
102,091 + EX28DRAFT_3432 0.67 +0.3
102,115 - EX28DRAFT_3432 0.69 +1.3
102,209 + EX28DRAFT_3432 0.77 +0.2
102,209 + EX28DRAFT_3432 0.77 -0.1
102,209 + EX28DRAFT_3432 0.77 +0.9
102,209 + EX28DRAFT_3432 0.77 +0.2
102,210 - EX28DRAFT_3432 0.77 -0.2
102,210 - EX28DRAFT_3432 0.77 -1.5
102,210 - EX28DRAFT_3432 0.77 -0.4
102,210 - EX28DRAFT_3432 0.77 -0.5
102,348 - EX28DRAFT_3432 0.89 +0.0
102,348 - EX28DRAFT_3432 0.89 +0.6
102,426 - -0.2
102,468 - +0.4
102,474 + -0.3
102,474 + +0.4
102,474 + +0.0
102,512 - +0.0
102,605 + -0.9
102,651 - +0.7
102,651 - +0.1
102,741 - EX28DRAFT_3433 0.13 +1.0
102,809 + EX28DRAFT_3433 0.17 +1.0
103,383 + EX28DRAFT_3433 0.47 -0.4
103,383 + EX28DRAFT_3433 0.47 -0.1
103,383 + EX28DRAFT_3433 0.47 -0.1
103,384 - EX28DRAFT_3433 0.47 -0.7
103,384 - EX28DRAFT_3433 0.47 +0.1
103,410 + EX28DRAFT_3433 0.48 -0.7
103,410 + EX28DRAFT_3433 0.48 -0.4
103,413 - EX28DRAFT_3433 0.48 +0.6
103,416 + EX28DRAFT_3433 0.49 +0.0
103,416 + EX28DRAFT_3433 0.49 -0.1
103,416 + EX28DRAFT_3433 0.49 +0.0
103,416 + EX28DRAFT_3433 0.49 -1.1
103,417 - EX28DRAFT_3433 0.49 +1.2
103,417 - EX28DRAFT_3433 0.49 +0.4
103,417 - EX28DRAFT_3433 0.49 +0.4
103,417 - EX28DRAFT_3433 0.49 +0.0
103,417 - EX28DRAFT_3433 0.49 -0.4
103,417 - EX28DRAFT_3433 0.49 +0.6

Or see this region's nucleotide sequence