Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3202 and EX28DRAFT_3203 overlap by 21 nucleotides EX28DRAFT_3203 and EX28DRAFT_3204 are separated by 14 nucleotides EX28DRAFT_3204 and EX28DRAFT_3205 overlap by 14 nucleotides EX28DRAFT_3205 and EX28DRAFT_3206 overlap by 7 nucleotides EX28DRAFT_3206 and EX28DRAFT_3207 are separated by 211 nucleotides
EX28DRAFT_3202: EX28DRAFT_3202 - intracellular protease, PfpI family, at 502,958 to 503,476
_3202
EX28DRAFT_3203: EX28DRAFT_3203 - Uncharacterized protein conserved in bacteria, at 503,456 to 503,890
_3203
EX28DRAFT_3204: EX28DRAFT_3204 - Predicted endonuclease containing a URI domain, at 503,905 to 504,234
_3204
EX28DRAFT_3205: EX28DRAFT_3205 - Predicted acetyltransferase, at 504,221 to 504,724
_3205
EX28DRAFT_3206: EX28DRAFT_3206 - Putative lipid carrier protein, at 504,718 to 505,242
_3206
EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449
_3207
Position (kb) 504
505 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.474 kb on + strand at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.590 kb on - strand, within EX28DRAFT_3203 at 503.645 kb on - strand, within EX28DRAFT_3203 at 503.761 kb on - strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.784 kb on + strand, within EX28DRAFT_3203 at 503.785 kb on - strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.787 kb on + strand, within EX28DRAFT_3203 at 503.790 kb on + strand, within EX28DRAFT_3203 at 503.791 kb on - strand, within EX28DRAFT_3203 at 503.909 kb on + strand at 503.909 kb on + strand at 503.910 kb on - strand at 503.910 kb on - strand at 503.926 kb on - strand at 503.926 kb on - strand at 503.941 kb on + strand, within EX28DRAFT_3204 at 503.942 kb on - strand, within EX28DRAFT_3204 at 503.962 kb on + strand, within EX28DRAFT_3204 at 503.992 kb on + strand, within EX28DRAFT_3204 at 504.081 kb on - strand, within EX28DRAFT_3204 at 504.081 kb on - strand, within EX28DRAFT_3204 at 504.222 kb on + strand at 504.223 kb on - strand at 504.223 kb on - strand at 504.223 kb on - strand at 504.444 kb on + strand, within EX28DRAFT_3205 at 504.477 kb on + strand, within EX28DRAFT_3205 at 504.558 kb on + strand, within EX28DRAFT_3205 at 504.605 kb on - strand, within EX28DRAFT_3205 at 504.734 kb on - strand at 504.832 kb on + strand, within EX28DRAFT_3206 at 504.833 kb on - strand, within EX28DRAFT_3206 at 504.863 kb on + strand, within EX28DRAFT_3206 at 505.249 kb on + strand at 505.263 kb on + strand at 505.263 kb on + strand at 505.263 kb on + strand at 505.263 kb on + strand at 505.263 kb on + strand at 505.263 kb on + strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.264 kb on - strand at 505.266 kb on - strand at 505.334 kb on - strand at 505.342 kb on - strand at 505.342 kb on - strand at 505.364 kb on + strand at 505.365 kb on - strand at 505.373 kb on + strand at 505.374 kb on - strand at 505.438 kb on + strand at 505.438 kb on + strand at 505.493 kb on - strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.527 kb on - strand at 505.527 kb on - strand at 505.649 kb on + strand, within EX28DRAFT_3207 at 505.652 kb on - strand, within EX28DRAFT_3207
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 503,474 + +0.4 503,590 - EX28DRAFT_3203 0.31 -0.2 503,590 - EX28DRAFT_3203 0.31 +0.1 503,645 - EX28DRAFT_3203 0.43 +2.0 503,761 - EX28DRAFT_3203 0.70 +0.1 503,784 + EX28DRAFT_3203 0.75 +0.3 503,784 + EX28DRAFT_3203 0.75 -0.4 503,785 - EX28DRAFT_3203 0.76 +0.3 503,787 + EX28DRAFT_3203 0.76 +0.0 503,787 + EX28DRAFT_3203 0.76 +0.2 503,790 + EX28DRAFT_3203 0.77 -0.8 503,791 - EX28DRAFT_3203 0.77 +0.1 503,909 + -0.2 503,909 + -0.0 503,910 - +1.3 503,910 - +0.0 503,926 - -0.6 503,926 - +0.4 503,941 + EX28DRAFT_3204 0.11 +0.6 503,942 - EX28DRAFT_3204 0.11 -1.5 503,962 + EX28DRAFT_3204 0.17 -1.1 503,992 + EX28DRAFT_3204 0.26 +0.1 504,081 - EX28DRAFT_3204 0.53 -1.0 504,081 - EX28DRAFT_3204 0.53 -0.8 504,222 + +0.1 504,223 - -1.2 504,223 - -0.5 504,223 - +0.1 504,444 + EX28DRAFT_3205 0.44 -0.2 504,477 + EX28DRAFT_3205 0.51 -0.1 504,558 + EX28DRAFT_3205 0.67 +0.5 504,605 - EX28DRAFT_3205 0.76 -1.7 504,734 - +0.2 504,832 + EX28DRAFT_3206 0.22 +0.1 504,833 - EX28DRAFT_3206 0.22 +0.2 504,863 + EX28DRAFT_3206 0.28 +0.5 505,249 + +0.1 505,263 + +0.0 505,263 + -0.1 505,263 + -0.1 505,263 + +0.5 505,263 + +0.0 505,263 + +0.1 505,264 - -2.7 505,264 - +0.1 505,264 - -1.0 505,264 - -0.4 505,264 - -0.5 505,264 - -0.0 505,264 - +0.1 505,266 - -0.5 505,334 - +0.0 505,342 - -0.5 505,342 - +0.0 505,364 + -0.2 505,365 - +0.2 505,373 + -0.6 505,374 - -0.2 505,438 + +0.5 505,438 + -1.1 505,493 - +0.3 505,526 + -0.3 505,526 + +0.1 505,526 + +0.2 505,527 - +0.1 505,527 - +1.1 505,649 + EX28DRAFT_3207 0.20 -0.3 505,652 - EX28DRAFT_3207 0.20 +0.4
Or see this region's nucleotide sequence