Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3158 and EX28DRAFT_3159 are separated by 86 nucleotides EX28DRAFT_3159 and EX28DRAFT_3160 are separated by 17 nucleotides
EX28DRAFT_3158: EX28DRAFT_3158 - Na+/serine symporter, at 459,917 to 461,158
_3158
EX28DRAFT_3159: EX28DRAFT_3159 - Altronate dehydratase, at 461,245 to 462,732
_3159
EX28DRAFT_3160: EX28DRAFT_3160 - Glucuronate isomerase, at 462,750 to 464,162
_3160
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.358 kb on + strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.463 kb on - strand, within EX28DRAFT_3158 at 460.588 kb on + strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158 at 460.689 kb on + strand, within EX28DRAFT_3158 at 460.690 kb on - strand, within EX28DRAFT_3158 at 460.692 kb on - strand, within EX28DRAFT_3158 at 460.692 kb on - strand, within EX28DRAFT_3158 at 460.775 kb on + strand, within EX28DRAFT_3158 at 460.775 kb on + strand, within EX28DRAFT_3158 at 460.776 kb on - strand, within EX28DRAFT_3158 at 460.982 kb on - strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.984 kb on + strand, within EX28DRAFT_3158 at 460.985 kb on - strand, within EX28DRAFT_3158 at 460.985 kb on - strand, within EX28DRAFT_3158 at 461.036 kb on - strand at 461.156 kb on + strand at 461.162 kb on + strand at 461.163 kb on - strand at 461.163 kb on - strand at 461.208 kb on + strand at 461.208 kb on + strand at 461.209 kb on - strand at 461.246 kb on + strand at 461.247 kb on - strand at 461.335 kb on - strand at 461.335 kb on - strand at 461.337 kb on + strand at 461.674 kb on - strand, within EX28DRAFT_3159 at 461.741 kb on + strand, within EX28DRAFT_3159 at 461.814 kb on + strand, within EX28DRAFT_3159 at 461.875 kb on + strand, within EX28DRAFT_3159 at 461.875 kb on + strand, within EX28DRAFT_3159 at 461.876 kb on - strand, within EX28DRAFT_3159 at 461.879 kb on + strand, within EX28DRAFT_3159 at 462.009 kb on - strand, within EX28DRAFT_3159 at 462.069 kb on + strand, within EX28DRAFT_3159 at 462.242 kb on + strand, within EX28DRAFT_3159 at 462.242 kb on + strand, within EX28DRAFT_3159 at 462.243 kb on - strand, within EX28DRAFT_3159 at 462.243 kb on - strand, within EX28DRAFT_3159 at 462.401 kb on + strand, within EX28DRAFT_3159 at 462.458 kb on + strand, within EX28DRAFT_3159 at 462.459 kb on - strand, within EX28DRAFT_3159 at 462.464 kb on + strand, within EX28DRAFT_3159 at 462.464 kb on + strand, within EX28DRAFT_3159 at 462.465 kb on - strand, within EX28DRAFT_3159 at 462.465 kb on - strand, within EX28DRAFT_3159 at 462.496 kb on - strand, within EX28DRAFT_3159 at 462.512 kb on + strand, within EX28DRAFT_3159 at 462.513 kb on - strand, within EX28DRAFT_3159 at 462.725 kb on + strand at 462.726 kb on - strand at 462.726 kb on - strand at 462.726 kb on - strand at 462.733 kb on - strand at 462.772 kb on + strand at 462.789 kb on - strand at 462.825 kb on + strand at 462.826 kb on - strand at 462.826 kb on - strand at 462.907 kb on + strand, within EX28DRAFT_3160 at 462.907 kb on + strand, within EX28DRAFT_3160 at 462.908 kb on - strand, within EX28DRAFT_3160 at 463.117 kb on + strand, within EX28DRAFT_3160 at 463.118 kb on - strand, within EX28DRAFT_3160 at 463.434 kb on + strand, within EX28DRAFT_3160 at 463.434 kb on + strand, within EX28DRAFT_3160 at 463.435 kb on - strand, within EX28DRAFT_3160 at 463.564 kb on + strand, within EX28DRAFT_3160 at 463.565 kb on - strand, within EX28DRAFT_3160
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 460,358 + EX28DRAFT_3158 0.36 +0.0 460,359 - EX28DRAFT_3158 0.36 -0.2 460,359 - EX28DRAFT_3158 0.36 -2.1 460,359 - EX28DRAFT_3158 0.36 +0.4 460,463 - EX28DRAFT_3158 0.44 +0.8 460,588 + EX28DRAFT_3158 0.54 -1.1 460,589 - EX28DRAFT_3158 0.54 +0.2 460,589 - EX28DRAFT_3158 0.54 +0.6 460,689 + EX28DRAFT_3158 0.62 +0.5 460,690 - EX28DRAFT_3158 0.62 +0.3 460,692 - EX28DRAFT_3158 0.62 +0.2 460,692 - EX28DRAFT_3158 0.62 +0.1 460,775 + EX28DRAFT_3158 0.69 -0.1 460,775 + EX28DRAFT_3158 0.69 +0.1 460,776 - EX28DRAFT_3158 0.69 -0.4 460,982 - EX28DRAFT_3158 0.86 -1.5 460,984 + EX28DRAFT_3158 0.86 +1.6 460,984 + EX28DRAFT_3158 0.86 -0.1 460,984 + EX28DRAFT_3158 0.86 -0.6 460,984 + EX28DRAFT_3158 0.86 +0.0 460,984 + EX28DRAFT_3158 0.86 -0.3 460,985 - EX28DRAFT_3158 0.86 -0.2 460,985 - EX28DRAFT_3158 0.86 +0.1 461,036 - -0.3 461,156 + +1.1 461,162 + +0.0 461,163 - -0.3 461,163 - +0.0 461,208 + -0.1 461,208 + -0.1 461,209 - +0.2 461,246 + -0.2 461,247 - +1.3 461,335 - +0.2 461,335 - +0.6 461,337 + -0.8 461,674 - EX28DRAFT_3159 0.29 +0.1 461,741 + EX28DRAFT_3159 0.33 +0.1 461,814 + EX28DRAFT_3159 0.38 -0.0 461,875 + EX28DRAFT_3159 0.42 +0.4 461,875 + EX28DRAFT_3159 0.42 +0.4 461,876 - EX28DRAFT_3159 0.42 -0.3 461,879 + EX28DRAFT_3159 0.43 -0.4 462,009 - EX28DRAFT_3159 0.51 -0.3 462,069 + EX28DRAFT_3159 0.55 -0.5 462,242 + EX28DRAFT_3159 0.67 +0.3 462,242 + EX28DRAFT_3159 0.67 +0.2 462,243 - EX28DRAFT_3159 0.67 +0.5 462,243 - EX28DRAFT_3159 0.67 -1.0 462,401 + EX28DRAFT_3159 0.78 +0.3 462,458 + EX28DRAFT_3159 0.82 +0.5 462,459 - EX28DRAFT_3159 0.82 +0.2 462,464 + EX28DRAFT_3159 0.82 -0.1 462,464 + EX28DRAFT_3159 0.82 +0.8 462,465 - EX28DRAFT_3159 0.82 +1.9 462,465 - EX28DRAFT_3159 0.82 -0.9 462,496 - EX28DRAFT_3159 0.84 +1.9 462,512 + EX28DRAFT_3159 0.85 +0.2 462,513 - EX28DRAFT_3159 0.85 +0.3 462,725 + -0.3 462,726 - -0.8 462,726 - +0.2 462,726 - -0.3 462,733 - +0.2 462,772 + +0.7 462,789 - +0.0 462,825 + -0.3 462,826 - +0.3 462,826 - -0.8 462,907 + EX28DRAFT_3160 0.11 +1.5 462,907 + EX28DRAFT_3160 0.11 -0.1 462,908 - EX28DRAFT_3160 0.11 +0.3 463,117 + EX28DRAFT_3160 0.26 -0.2 463,118 - EX28DRAFT_3160 0.26 -0.4 463,434 + EX28DRAFT_3160 0.48 -0.3 463,434 + EX28DRAFT_3160 0.48 -0.4 463,435 - EX28DRAFT_3160 0.48 +0.0 463,564 + EX28DRAFT_3160 0.58 -0.2 463,565 - EX28DRAFT_3160 0.58 +2.5
Or see this region's nucleotide sequence