Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3142 and EX28DRAFT_3143 are separated by 12 nucleotides EX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotides EX28DRAFT_3144 and EX28DRAFT_3145 overlap by 4 nucleotides EX28DRAFT_3145 and EX28DRAFT_3146 are separated by 11 nucleotides
EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911
_3142
EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772
_3143
EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121
_3144
EX28DRAFT_3145: EX28DRAFT_3145 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 445,118 to 446,005
_3145
EX28DRAFT_3146: EX28DRAFT_3146 - ABC-type sugar transport system, periplasmic component, at 446,017 to 447,018
_3146
Position (kb) 444
445
446 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 443.909 kb on + strand at 443.909 kb on + strand at 444.062 kb on + strand, within EX28DRAFT_3143 at 444.063 kb on - strand, within EX28DRAFT_3143 at 444.068 kb on + strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.360 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.387 kb on + strand, within EX28DRAFT_3143 at 444.388 kb on - strand, within EX28DRAFT_3143 at 444.630 kb on - strand, within EX28DRAFT_3143 at 444.635 kb on - strand, within EX28DRAFT_3143 at 444.743 kb on - strand at 444.817 kb on + strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.819 kb on + strand at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.864 kb on - strand, within EX28DRAFT_3144 at 444.910 kb on + strand, within EX28DRAFT_3144 at 444.911 kb on - strand, within EX28DRAFT_3144 at 444.955 kb on + strand, within EX28DRAFT_3144 at 444.964 kb on + strand, within EX28DRAFT_3144 at 444.964 kb on + strand, within EX28DRAFT_3144 at 444.965 kb on - strand, within EX28DRAFT_3144 at 444.969 kb on - strand, within EX28DRAFT_3144 at 445.003 kb on - strand, within EX28DRAFT_3144 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.091 kb on + strand, within EX28DRAFT_3144 at 445.092 kb on - strand at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.240 kb on + strand, within EX28DRAFT_3145 at 445.389 kb on + strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.390 kb on - strand, within EX28DRAFT_3145 at 445.393 kb on - strand, within EX28DRAFT_3145 at 445.450 kb on - strand, within EX28DRAFT_3145 at 445.578 kb on + strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.579 kb on - strand, within EX28DRAFT_3145 at 445.994 kb on + strand at 445.995 kb on - strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.099 kb on + strand at 446.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 443,909 + +0.2 443,909 + -0.5 444,062 + EX28DRAFT_3143 0.16 +0.6 444,063 - EX28DRAFT_3143 0.16 -0.5 444,068 + EX28DRAFT_3143 0.17 +0.2 444,315 - EX28DRAFT_3143 0.46 +0.3 444,315 - EX28DRAFT_3143 0.46 -0.7 444,360 + EX28DRAFT_3143 0.51 +0.9 444,385 + EX28DRAFT_3143 0.54 -0.7 444,385 + EX28DRAFT_3143 0.54 +0.2 444,387 + EX28DRAFT_3143 0.55 -0.5 444,388 - EX28DRAFT_3143 0.55 +0.2 444,630 - EX28DRAFT_3143 0.83 -4.4 444,635 - EX28DRAFT_3143 0.84 +0.7 444,743 - +0.1 444,817 + -0.3 444,818 - +0.5 444,818 - +0.0 444,818 - +0.4 444,819 + +0.1 444,863 + EX28DRAFT_3144 0.12 -1.5 444,863 + EX28DRAFT_3144 0.12 -0.1 444,863 + EX28DRAFT_3144 0.12 -0.4 444,864 - EX28DRAFT_3144 0.12 -0.2 444,910 + EX28DRAFT_3144 0.28 +0.6 444,911 - EX28DRAFT_3144 0.28 -0.6 444,955 + EX28DRAFT_3144 0.43 +0.6 444,964 + EX28DRAFT_3144 0.46 +0.3 444,964 + EX28DRAFT_3144 0.46 -0.1 444,965 - EX28DRAFT_3144 0.47 +0.6 444,969 - EX28DRAFT_3144 0.48 -0.4 445,003 - EX28DRAFT_3144 0.60 -0.8 445,091 + EX28DRAFT_3144 0.89 -1.3 445,091 + EX28DRAFT_3144 0.89 -0.3 445,092 - +0.1 445,240 + EX28DRAFT_3145 0.14 -0.4 445,240 + EX28DRAFT_3145 0.14 +0.5 445,389 + EX28DRAFT_3145 0.31 +1.0 445,390 - EX28DRAFT_3145 0.31 +0.2 445,390 - EX28DRAFT_3145 0.31 -0.1 445,390 - EX28DRAFT_3145 0.31 +0.3 445,390 - EX28DRAFT_3145 0.31 +0.2 445,393 - EX28DRAFT_3145 0.31 +0.1 445,450 - EX28DRAFT_3145 0.37 -0.1 445,578 + EX28DRAFT_3145 0.52 +0.6 445,579 - EX28DRAFT_3145 0.52 +0.1 445,579 - EX28DRAFT_3145 0.52 -0.2 445,579 - EX28DRAFT_3145 0.52 -0.7 445,579 - EX28DRAFT_3145 0.52 +0.3 445,579 - EX28DRAFT_3145 0.52 +0.1 445,994 + -0.4 445,995 - +0.1 446,099 + -0.4 446,099 + -0.9 446,099 + +0.5 446,100 - +0.1
Or see this region's nucleotide sequence