Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2936

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2935 and EX28DRAFT_2936 are separated by 777 nucleotidesEX28DRAFT_2936 and EX28DRAFT_2937 are separated by 22 nucleotidesEX28DRAFT_2937 and EX28DRAFT_2938 are separated by 554 nucleotidesEX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotides EX28DRAFT_2935: EX28DRAFT_2935 - ABC-type spermidine/putrescine transport systems, ATPase components, at 245,896 to 246,966 _2935 EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346 _2936 EX28DRAFT_2937: EX28DRAFT_2937 - hypothetical protein, at 248,369 to 248,614 _2937 EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242 _2938 EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066 _2939 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2 3at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.823 kb on + strand, within EX28DRAFT_2935at 246.844 kb on + strand, within EX28DRAFT_2935at 246.887 kb on - strandat 246.980 kb on - strandat 247.096 kb on + strandat 247.163 kb on + strandat 247.188 kb on + strandat 247.199 kb on - strandat 247.224 kb on - strandat 247.393 kb on + strandat 247.397 kb on - strandat 247.425 kb on + strandat 247.438 kb on + strandat 247.477 kb on + strandat 247.479 kb on + strandat 247.492 kb on + strandat 247.561 kb on + strandat 247.662 kb on + strandat 247.663 kb on - strandat 247.663 kb on - strandat 247.703 kb on - strandat 247.703 kb on - strandat 247.778 kb on + strandat 247.812 kb on + strand, within EX28DRAFT_2936at 247.814 kb on + strand, within EX28DRAFT_2936at 247.831 kb on + strand, within EX28DRAFT_2936at 247.844 kb on + strand, within EX28DRAFT_2936at 247.868 kb on + strand, within EX28DRAFT_2936at 247.869 kb on - strand, within EX28DRAFT_2936at 247.869 kb on - strand, within EX28DRAFT_2936at 247.893 kb on - strand, within EX28DRAFT_2936at 247.992 kb on + strand, within EX28DRAFT_2936at 248.025 kb on + strand, within EX28DRAFT_2936at 248.034 kb on + strand, within EX28DRAFT_2936at 248.036 kb on + strand, within EX28DRAFT_2936at 248.112 kb on - strand, within EX28DRAFT_2936at 248.156 kb on + strand, within EX28DRAFT_2936at 248.233 kb on + strand, within EX28DRAFT_2936at 248.233 kb on + strand, within EX28DRAFT_2936at 248.413 kb on - strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.415 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.423 kb on + strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.509 kb on - strand, within EX28DRAFT_2937at 248.512 kb on + strand, within EX28DRAFT_2937at 248.513 kb on - strand, within EX28DRAFT_2937at 248.523 kb on + strand, within EX28DRAFT_2937at 248.590 kb on + strandat 248.590 kb on + strandat 248.627 kb on + strandat 248.631 kb on + strandat 248.683 kb on - strandat 248.701 kb on + strandat 248.710 kb on + strandat 248.711 kb on - strandat 248.844 kb on - strandat 248.864 kb on + strandat 248.865 kb on - strandat 248.865 kb on - strandat 248.931 kb on + strandat 248.971 kb on - strandat 249.081 kb on + strandat 249.093 kb on + strandat 249.098 kb on + strandat 249.099 kb on - strandat 249.223 kb on + strand, within EX28DRAFT_2938at 249.264 kb on + strandat 249.264 kb on + strandat 249.264 kb on + strandat 249.283 kb on + strandat 249.283 kb on + strandat 249.284 kb on - strandat 249.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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246,823 + EX28DRAFT_2935 0.87 +0.4
246,823 + EX28DRAFT_2935 0.87 -0.3
246,823 + EX28DRAFT_2935 0.87 +0.2
246,844 + EX28DRAFT_2935 0.89 -0.2
246,887 - -0.2
246,980 - +0.5
247,096 + -0.1
247,163 + +0.2
247,188 + -0.4
247,199 - -0.2
247,224 - +0.0
247,393 + +1.2
247,397 - +2.1
247,425 + +0.5
247,438 + +0.3
247,477 + -0.9
247,479 + +0.1
247,492 + +0.2
247,561 + +0.2
247,662 + -0.0
247,663 - +0.0
247,663 - +1.6
247,703 - -0.7
247,703 - +0.2
247,778 + -0.7
247,812 + EX28DRAFT_2936 0.11 +0.4
247,814 + EX28DRAFT_2936 0.12 +0.9
247,831 + EX28DRAFT_2936 0.14 +0.8
247,844 + EX28DRAFT_2936 0.17 -0.2
247,868 + EX28DRAFT_2936 0.21 +0.2
247,869 - EX28DRAFT_2936 0.21 +0.5
247,869 - EX28DRAFT_2936 0.21 -0.0
247,893 - EX28DRAFT_2936 0.25 +0.3
247,992 + EX28DRAFT_2936 0.41 -0.0
248,025 + EX28DRAFT_2936 0.47 +0.1
248,034 + EX28DRAFT_2936 0.48 +0.7
248,036 + EX28DRAFT_2936 0.48 +0.5
248,112 - EX28DRAFT_2936 0.61 +1.3
248,156 + EX28DRAFT_2936 0.68 -1.8
248,233 + EX28DRAFT_2936 0.81 +0.1
248,233 + EX28DRAFT_2936 0.81 +0.5
248,413 - EX28DRAFT_2937 0.18 +0.6
248,414 + EX28DRAFT_2937 0.18 +0.2
248,414 + EX28DRAFT_2937 0.18 -1.3
248,415 - EX28DRAFT_2937 0.19 -1.0
248,417 - EX28DRAFT_2937 0.20 +0.1
248,417 - EX28DRAFT_2937 0.20 -0.3
248,423 + EX28DRAFT_2937 0.22 -0.5
248,424 - EX28DRAFT_2937 0.22 -0.0
248,424 - EX28DRAFT_2937 0.22 +0.1
248,509 - EX28DRAFT_2937 0.57 -0.5
248,512 + EX28DRAFT_2937 0.58 -0.5
248,513 - EX28DRAFT_2937 0.59 -0.2
248,523 + EX28DRAFT_2937 0.63 -0.3
248,590 + -0.1
248,590 + +0.0
248,627 + +0.6
248,631 + +0.3
248,683 - -0.2
248,701 + -0.7
248,710 + -0.2
248,711 - -1.2
248,844 - +0.2
248,864 + +0.1
248,865 - +0.3
248,865 - -0.0
248,931 + +0.5
248,971 - +2.9
249,081 + +0.0
249,093 + -0.2
249,098 + -1.9
249,099 - -0.8
249,223 + EX28DRAFT_2938 0.73 -2.5
249,264 + -0.2
249,264 + +0.8
249,264 + +0.7
249,283 + -0.1
249,283 + +0.9
249,284 - -1.1
249,284 - +0.4

Or see this region's nucleotide sequence