Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2881 and EX28DRAFT_2882 overlap by 8 nucleotides EX28DRAFT_2882 and EX28DRAFT_2883 are separated by 39 nucleotides
EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358
_2881
EX28DRAFT_2882: EX28DRAFT_2882 - Uncharacterized small membrane protein, at 189,351 to 189,746
_2882
EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703
_2883
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 188.358 kb on - strand at 188.358 kb on - strand at 188.394 kb on + strand, within EX28DRAFT_2881 at 188.555 kb on - strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.843 kb on - strand, within EX28DRAFT_2881 at 188.868 kb on + strand, within EX28DRAFT_2881 at 188.875 kb on - strand, within EX28DRAFT_2881 at 188.881 kb on + strand, within EX28DRAFT_2881 at 188.882 kb on - strand, within EX28DRAFT_2881 at 188.883 kb on + strand, within EX28DRAFT_2881 at 188.884 kb on - strand, within EX28DRAFT_2881 at 188.911 kb on + strand, within EX28DRAFT_2881 at 188.940 kb on + strand, within EX28DRAFT_2881 at 189.020 kb on - strand, within EX28DRAFT_2881 at 189.237 kb on + strand, within EX28DRAFT_2881 at 189.341 kb on + strand at 189.341 kb on + strand at 189.341 kb on + strand at 189.342 kb on - strand at 189.403 kb on - strand, within EX28DRAFT_2882 at 189.405 kb on + strand, within EX28DRAFT_2882 at 189.444 kb on - strand, within EX28DRAFT_2882 at 189.484 kb on + strand, within EX28DRAFT_2882 at 189.509 kb on + strand, within EX28DRAFT_2882 at 189.548 kb on + strand, within EX28DRAFT_2882 at 189.611 kb on - strand, within EX28DRAFT_2882 at 189.663 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.666 kb on + strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.667 kb on - strand, within EX28DRAFT_2882 at 189.701 kb on + strand, within EX28DRAFT_2882 at 189.751 kb on - strand at 189.751 kb on - strand at 189.788 kb on - strand at 189.797 kb on - strand at 189.867 kb on - strand at 189.901 kb on + strand, within EX28DRAFT_2883 at 189.902 kb on - strand, within EX28DRAFT_2883 at 189.924 kb on + strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.925 kb on - strand, within EX28DRAFT_2883 at 189.933 kb on - strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.070 kb on + strand, within EX28DRAFT_2883 at 190.083 kb on + strand, within EX28DRAFT_2883 at 190.084 kb on - strand, within EX28DRAFT_2883 at 190.182 kb on + strand, within EX28DRAFT_2883 at 190.222 kb on + strand, within EX28DRAFT_2883 at 190.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 188,358 - +0.1 188,358 - -0.7 188,394 + EX28DRAFT_2881 0.12 -1.7 188,555 - EX28DRAFT_2881 0.27 -1.0 188,659 + EX28DRAFT_2881 0.36 -0.2 188,659 + EX28DRAFT_2881 0.36 +0.3 188,680 - EX28DRAFT_2881 0.38 +0.1 188,680 - EX28DRAFT_2881 0.38 -0.1 188,719 - EX28DRAFT_2881 0.42 -0.2 188,719 - EX28DRAFT_2881 0.42 +0.2 188,719 - EX28DRAFT_2881 0.42 +0.4 188,843 - EX28DRAFT_2881 0.53 +1.0 188,868 + EX28DRAFT_2881 0.55 -0.2 188,875 - EX28DRAFT_2881 0.56 +0.6 188,881 + EX28DRAFT_2881 0.57 -0.2 188,882 - EX28DRAFT_2881 0.57 -0.4 188,883 + EX28DRAFT_2881 0.57 +0.2 188,884 - EX28DRAFT_2881 0.57 +0.4 188,911 + EX28DRAFT_2881 0.59 +0.0 188,940 + EX28DRAFT_2881 0.62 -0.1 189,020 - EX28DRAFT_2881 0.69 +0.3 189,237 + EX28DRAFT_2881 0.89 -0.2 189,341 + +0.3 189,341 + +0.3 189,341 + -0.6 189,342 - +0.4 189,403 - EX28DRAFT_2882 0.13 -0.3 189,405 + EX28DRAFT_2882 0.14 +0.0 189,444 - EX28DRAFT_2882 0.23 +0.1 189,484 + EX28DRAFT_2882 0.34 -0.1 189,509 + EX28DRAFT_2882 0.40 +1.3 189,548 + EX28DRAFT_2882 0.50 +0.5 189,611 - EX28DRAFT_2882 0.66 +0.3 189,663 + EX28DRAFT_2882 0.79 +0.1 189,666 + EX28DRAFT_2882 0.80 -0.5 189,666 + EX28DRAFT_2882 0.80 +0.2 189,666 + EX28DRAFT_2882 0.80 +0.1 189,666 + EX28DRAFT_2882 0.80 -0.2 189,667 - EX28DRAFT_2882 0.80 -0.2 189,667 - EX28DRAFT_2882 0.80 +0.4 189,667 - EX28DRAFT_2882 0.80 -0.0 189,667 - EX28DRAFT_2882 0.80 +0.1 189,701 + EX28DRAFT_2882 0.88 +1.4 189,751 - +0.2 189,751 - +0.2 189,788 - +1.1 189,797 - +0.4 189,867 - +0.5 189,901 + EX28DRAFT_2883 0.13 +0.1 189,902 - EX28DRAFT_2883 0.13 -0.7 189,924 + EX28DRAFT_2883 0.15 +0.1 189,925 - EX28DRAFT_2883 0.15 -0.8 189,925 - EX28DRAFT_2883 0.15 +0.1 189,933 - EX28DRAFT_2883 0.16 -2.0 190,070 + EX28DRAFT_2883 0.31 -1.2 190,070 + EX28DRAFT_2883 0.31 +0.1 190,083 + EX28DRAFT_2883 0.32 +0.2 190,084 - EX28DRAFT_2883 0.32 +0.0 190,182 + EX28DRAFT_2883 0.43 +0.3 190,222 + EX28DRAFT_2883 0.47 -0.6 190,635 - +0.1
Or see this region's nucleotide sequence