Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2868 and EX28DRAFT_2869 are separated by 15 nucleotides EX28DRAFT_2869 and EX28DRAFT_2870 overlap by 1 nucleotides
EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883
_2868
EX28DRAFT_2869: EX28DRAFT_2869 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 175,899 to 177,239
_2869
EX28DRAFT_2870: EX28DRAFT_2870 - D-galactonate transporter, at 177,239 to 178,594
_2870
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -1
0
1 at 175.284 kb on - strand, within EX28DRAFT_2868 at 175.291 kb on + strand, within EX28DRAFT_2868 at 175.439 kb on - strand, within EX28DRAFT_2868 at 175.623 kb on - strand, within EX28DRAFT_2868 at 175.770 kb on - strand at 175.877 kb on + strand at 175.947 kb on + strand at 175.954 kb on + strand at 175.954 kb on + strand at 176.001 kb on - strand at 176.376 kb on - strand, within EX28DRAFT_2869 at 176.785 kb on + strand, within EX28DRAFT_2869 at 176.786 kb on - strand, within EX28DRAFT_2869 at 176.795 kb on - strand, within EX28DRAFT_2869 at 176.951 kb on + strand, within EX28DRAFT_2869 at 176.951 kb on + strand, within EX28DRAFT_2869 at 177.058 kb on + strand, within EX28DRAFT_2869 at 177.059 kb on - strand, within EX28DRAFT_2869 at 177.126 kb on - strand at 177.126 kb on - strand at 177.262 kb on + strand at 177.336 kb on + strand at 177.336 kb on + strand at 177.378 kb on + strand, within EX28DRAFT_2870 at 177.398 kb on - strand, within EX28DRAFT_2870 at 177.561 kb on + strand, within EX28DRAFT_2870 at 177.561 kb on + strand, within EX28DRAFT_2870 at 177.616 kb on + strand, within EX28DRAFT_2870 at 177.617 kb on - strand, within EX28DRAFT_2870 at 177.762 kb on + strand, within EX28DRAFT_2870 at 177.762 kb on + strand, within EX28DRAFT_2870 at 177.763 kb on - strand, within EX28DRAFT_2870 at 177.790 kb on - strand, within EX28DRAFT_2870 at 177.806 kb on - strand, within EX28DRAFT_2870 at 177.806 kb on - strand, within EX28DRAFT_2870 at 177.822 kb on + strand, within EX28DRAFT_2870 at 177.823 kb on - strand, within EX28DRAFT_2870 at 177.823 kb on - strand, within EX28DRAFT_2870 at 177.839 kb on - strand, within EX28DRAFT_2870 at 177.916 kb on + strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.917 kb on - strand, within EX28DRAFT_2870 at 177.946 kb on - strand, within EX28DRAFT_2870
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 175,284 - EX28DRAFT_2868 0.55 -0.1 175,291 + EX28DRAFT_2868 0.56 +0.3 175,439 - EX28DRAFT_2868 0.67 +0.2 175,623 - EX28DRAFT_2868 0.80 -0.3 175,770 - -0.5 175,877 + -0.6 175,947 + +0.5 175,954 + -0.8 175,954 + +0.4 176,001 - -0.2 176,376 - EX28DRAFT_2869 0.36 -0.3 176,785 + EX28DRAFT_2869 0.66 -0.4 176,786 - EX28DRAFT_2869 0.66 +0.1 176,795 - EX28DRAFT_2869 0.67 -0.6 176,951 + EX28DRAFT_2869 0.78 -0.1 176,951 + EX28DRAFT_2869 0.78 -0.4 177,058 + EX28DRAFT_2869 0.86 -0.5 177,059 - EX28DRAFT_2869 0.87 +0.1 177,126 - -0.3 177,126 - +0.4 177,262 + +0.3 177,336 + +0.1 177,336 + +0.1 177,378 + EX28DRAFT_2870 0.10 -0.4 177,398 - EX28DRAFT_2870 0.12 +0.2 177,561 + EX28DRAFT_2870 0.24 +0.7 177,561 + EX28DRAFT_2870 0.24 -0.3 177,616 + EX28DRAFT_2870 0.28 -0.1 177,617 - EX28DRAFT_2870 0.28 -0.3 177,762 + EX28DRAFT_2870 0.39 +0.3 177,762 + EX28DRAFT_2870 0.39 -0.1 177,763 - EX28DRAFT_2870 0.39 -0.3 177,790 - EX28DRAFT_2870 0.41 -0.1 177,806 - EX28DRAFT_2870 0.42 +0.2 177,806 - EX28DRAFT_2870 0.42 +0.3 177,822 + EX28DRAFT_2870 0.43 -0.7 177,823 - EX28DRAFT_2870 0.43 +0.0 177,823 - EX28DRAFT_2870 0.43 +0.3 177,839 - EX28DRAFT_2870 0.44 +0.4 177,916 + EX28DRAFT_2870 0.50 +0.3 177,917 - EX28DRAFT_2870 0.50 -1.1 177,917 - EX28DRAFT_2870 0.50 -0.8 177,917 - EX28DRAFT_2870 0.50 -0.1 177,917 - EX28DRAFT_2870 0.50 +0.1 177,946 - EX28DRAFT_2870 0.52 -0.4
Or see this region's nucleotide sequence