Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2814 and EX28DRAFT_2815 overlap by 4 nucleotides EX28DRAFT_2815 and EX28DRAFT_2816 are separated by 69 nucleotides EX28DRAFT_2816 and EX28DRAFT_2817 are separated by 211 nucleotides EX28DRAFT_2817 and EX28DRAFT_2818 are separated by 3 nucleotides
EX28DRAFT_2814: EX28DRAFT_2814 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 117,647 to 119,461
_2814
EX28DRAFT_2815: EX28DRAFT_2815 - Fe-S-cluster-containing hydrogenase components 2, at 119,458 to 120,066
_2815
EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600
_2816
EX28DRAFT_2817: EX28DRAFT_2817 - hydrogenase nickel insertion protein HypA, at 120,812 to 121,162
_2817
EX28DRAFT_2818: EX28DRAFT_2818 - hydrogenase accessory protein HypB, at 121,166 to 122,029
_2818
Position (kb)
120
121 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 119.192 kb on - strand, within EX28DRAFT_2814 at 120.085 kb on + strand at 120.086 kb on - strand at 120.212 kb on + strand, within EX28DRAFT_2816 at 120.224 kb on + strand, within EX28DRAFT_2816 at 120.225 kb on - strand, within EX28DRAFT_2816 at 120.249 kb on - strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816 at 120.497 kb on - strand, within EX28DRAFT_2816 at 120.567 kb on - strand at 120.595 kb on - strand at 120.600 kb on + strand at 120.601 kb on - strand at 120.601 kb on - strand at 121.046 kb on + strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.047 kb on - strand, within EX28DRAFT_2817 at 121.165 kb on + strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.166 kb on - strand at 121.171 kb on + strand at 121.172 kb on - strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.202 kb on + strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.203 kb on - strand at 121.204 kb on + strand at 121.204 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.206 kb on + strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand at 121.207 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 119,192 - EX28DRAFT_2814 0.85 +0.3 120,085 + -0.3 120,086 - +0.8 120,212 + EX28DRAFT_2816 0.16 -0.8 120,224 + EX28DRAFT_2816 0.19 -0.2 120,225 - EX28DRAFT_2816 0.19 +0.2 120,249 - EX28DRAFT_2816 0.24 +0.1 120,330 + EX28DRAFT_2816 0.42 -0.6 120,330 + EX28DRAFT_2816 0.42 -1.4 120,497 - EX28DRAFT_2816 0.78 +0.1 120,567 - +0.3 120,595 - -0.1 120,600 + +0.1 120,601 - +2.3 120,601 - -0.4 121,046 + EX28DRAFT_2817 0.67 -0.3 121,047 - EX28DRAFT_2817 0.67 +0.2 121,047 - EX28DRAFT_2817 0.67 -0.3 121,047 - EX28DRAFT_2817 0.67 -0.1 121,047 - EX28DRAFT_2817 0.67 +0.7 121,047 - EX28DRAFT_2817 0.67 -0.8 121,047 - EX28DRAFT_2817 0.67 -0.0 121,165 + -0.1 121,166 - +0.1 121,166 - +0.1 121,166 - -1.6 121,166 - -0.0 121,171 + +0.2 121,172 - -0.7 121,202 + -1.6 121,202 + -0.2 121,202 + +0.8 121,202 + +0.3 121,202 + -0.4 121,203 - +0.4 121,203 - +0.2 121,203 - +0.1 121,203 - +0.5 121,203 - -0.0 121,203 - +1.0 121,203 - -0.4 121,203 - +1.7 121,204 + -3.2 121,204 + -0.2 121,206 + +0.0 121,206 + +0.4 121,206 + +0.0 121,206 + -0.5 121,206 + +0.0 121,206 + +0.3 121,206 + +0.2 121,206 + +1.0 121,206 + -0.2 121,207 - -0.7 121,207 - +0.1 121,207 - -0.4 121,207 - -0.0 121,207 - -0.3
Or see this region's nucleotide sequence