Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2699 and EX28DRAFT_2700 overlap by 4 nucleotides EX28DRAFT_2700 and EX28DRAFT_2701 are separated by 60 nucleotides
EX28DRAFT_2699: EX28DRAFT_2699 - chorismate mutase (EC 5.4.99.5), at 6,661 to 7,821
_2699
EX28DRAFT_2700: EX28DRAFT_2700 - Gluconolactonase, at 7,818 to 8,690
_2700
EX28DRAFT_2701: EX28DRAFT_2701 - chorismate mutase (EC 5.4.99.5), at 8,751 to 9,872
_2701
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 6.874 kb on + strand, within EX28DRAFT_2699 at 6.875 kb on - strand, within EX28DRAFT_2699 at 6.952 kb on - strand, within EX28DRAFT_2699 at 7.004 kb on - strand, within EX28DRAFT_2699 at 7.027 kb on + strand, within EX28DRAFT_2699 at 7.028 kb on - strand, within EX28DRAFT_2699 at 7.053 kb on + strand, within EX28DRAFT_2699 at 7.168 kb on + strand, within EX28DRAFT_2699 at 7.169 kb on - strand, within EX28DRAFT_2699 at 7.441 kb on + strand, within EX28DRAFT_2699 at 7.455 kb on - strand, within EX28DRAFT_2699 at 7.687 kb on + strand, within EX28DRAFT_2699 at 7.687 kb on + strand, within EX28DRAFT_2699 at 7.688 kb on - strand, within EX28DRAFT_2699 at 7.688 kb on - strand, within EX28DRAFT_2699 at 7.820 kb on - strand at 7.894 kb on + strand at 7.919 kb on + strand, within EX28DRAFT_2700 at 7.940 kb on + strand, within EX28DRAFT_2700 at 7.941 kb on - strand, within EX28DRAFT_2700 at 8.327 kb on - strand, within EX28DRAFT_2700 at 8.391 kb on - strand, within EX28DRAFT_2700 at 8.475 kb on - strand, within EX28DRAFT_2700 at 8.608 kb on + strand at 8.663 kb on - strand at 8.663 kb on - strand at 8.736 kb on - strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.739 kb on + strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.740 kb on - strand at 8.911 kb on + strand, within EX28DRAFT_2701 at 8.912 kb on - strand, within EX28DRAFT_2701 at 8.951 kb on + strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.952 kb on - strand, within EX28DRAFT_2701 at 8.955 kb on - strand, within EX28DRAFT_2701 at 8.966 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.020 kb on - strand, within EX28DRAFT_2701 at 9.023 kb on + strand, within EX28DRAFT_2701 at 9.625 kb on + strand, within EX28DRAFT_2701
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 6,874 + EX28DRAFT_2699 0.18 -1.0 6,875 - EX28DRAFT_2699 0.18 -4.6 6,952 - EX28DRAFT_2699 0.25 +0.8 7,004 - EX28DRAFT_2699 0.30 -0.7 7,027 + EX28DRAFT_2699 0.32 -4.2 7,028 - EX28DRAFT_2699 0.32 -4.2 7,053 + EX28DRAFT_2699 0.34 -3.5 7,168 + EX28DRAFT_2699 0.44 -1.6 7,169 - EX28DRAFT_2699 0.44 -2.3 7,441 + EX28DRAFT_2699 0.67 -3.0 7,455 - EX28DRAFT_2699 0.68 -0.6 7,687 + EX28DRAFT_2699 0.88 -1.4 7,687 + EX28DRAFT_2699 0.88 -0.9 7,688 - EX28DRAFT_2699 0.88 -1.3 7,688 - EX28DRAFT_2699 0.88 -1.0 7,820 - +1.2 7,894 + -0.2 7,919 + EX28DRAFT_2700 0.12 -1.5 7,940 + EX28DRAFT_2700 0.14 -0.6 7,941 - EX28DRAFT_2700 0.14 -0.7 8,327 - EX28DRAFT_2700 0.58 -0.0 8,391 - EX28DRAFT_2700 0.66 +0.3 8,475 - EX28DRAFT_2700 0.75 -0.3 8,608 + +0.1 8,663 - +0.1 8,663 - +0.2 8,736 - +0.7 8,739 + -0.8 8,739 + -0.3 8,739 + -0.4 8,739 + +0.3 8,739 + +0.1 8,740 - -1.1 8,740 - -0.3 8,740 - +0.7 8,740 - -0.3 8,911 + EX28DRAFT_2701 0.14 -2.1 8,912 - EX28DRAFT_2701 0.14 -2.9 8,951 + EX28DRAFT_2701 0.18 -3.2 8,952 - EX28DRAFT_2701 0.18 -2.0 8,952 - EX28DRAFT_2701 0.18 -1.0 8,952 - EX28DRAFT_2701 0.18 -2.4 8,955 - EX28DRAFT_2701 0.18 -0.2 8,966 - EX28DRAFT_2701 0.19 -3.5 9,020 - EX28DRAFT_2701 0.24 -5.1 9,020 - EX28DRAFT_2701 0.24 -1.7 9,020 - EX28DRAFT_2701 0.24 -2.0 9,023 + EX28DRAFT_2701 0.24 -1.6 9,625 + EX28DRAFT_2701 0.78 -3.4
Or see this region's nucleotide sequence