Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2652

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2651 and EX28DRAFT_2652 are separated by 304 nucleotidesEX28DRAFT_2652 and EX28DRAFT_2653 are separated by 109 nucleotidesEX28DRAFT_2653 and EX28DRAFT_2654 are separated by 57 nucleotides EX28DRAFT_2651: EX28DRAFT_2651 - glutamate 5-kinase, at 2,688,359 to 2,689,462 _2651 EX28DRAFT_2652: EX28DRAFT_2652 - Outer membrane protein (porin), at 2,689,767 to 2,690,819 _2652 EX28DRAFT_2653: EX28DRAFT_2653 - Transcriptional regulator Crl, at 2,690,929 to 2,691,330 _2653 EX28DRAFT_2654: EX28DRAFT_2654 - Alpha/beta hydrolase of unknown function (DUF1100), at 2,691,388 to 2,692,632 _2654 Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2689.182 kb on + strand, within EX28DRAFT_2651at 2689.182 kb on + strand, within EX28DRAFT_2651at 2689.183 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651at 2689.331 kb on - strand, within EX28DRAFT_2651at 2689.368 kb on - strandat 2689.368 kb on - strandat 2689.543 kb on + strandat 2689.544 kb on - strandat 2689.649 kb on - strandat 2689.750 kb on - strandat 2689.839 kb on + strandat 2689.839 kb on + strandat 2689.841 kb on + strandat 2689.853 kb on + strandat 2689.857 kb on - strandat 2689.857 kb on - strandat 2689.870 kb on - strandat 2689.893 kb on + strand, within EX28DRAFT_2652at 2689.893 kb on + strand, within EX28DRAFT_2652at 2689.894 kb on - strand, within EX28DRAFT_2652at 2689.894 kb on - strand, within EX28DRAFT_2652at 2689.932 kb on + strand, within EX28DRAFT_2652at 2689.933 kb on - strand, within EX28DRAFT_2652at 2689.933 kb on - strand, within EX28DRAFT_2652at 2690.016 kb on - strand, within EX28DRAFT_2652at 2690.144 kb on + strand, within EX28DRAFT_2652at 2690.145 kb on - strand, within EX28DRAFT_2652at 2690.277 kb on + strand, within EX28DRAFT_2652at 2690.278 kb on - strand, within EX28DRAFT_2652at 2690.346 kb on + strand, within EX28DRAFT_2652at 2690.346 kb on + strand, within EX28DRAFT_2652at 2690.347 kb on - strand, within EX28DRAFT_2652at 2690.473 kb on - strand, within EX28DRAFT_2652at 2690.490 kb on + strand, within EX28DRAFT_2652at 2690.505 kb on + strand, within EX28DRAFT_2652at 2690.523 kb on - strand, within EX28DRAFT_2652at 2690.583 kb on + strand, within EX28DRAFT_2652at 2690.676 kb on + strand, within EX28DRAFT_2652at 2690.676 kb on - strand, within EX28DRAFT_2652at 2690.802 kb on - strandat 2690.808 kb on + strandat 2690.809 kb on - strandat 2690.869 kb on + strandat 2690.870 kb on - strandat 2690.870 kb on - strandat 2690.927 kb on + strandat 2691.036 kb on + strand, within EX28DRAFT_2653at 2691.037 kb on - strand, within EX28DRAFT_2653at 2691.037 kb on - strand, within EX28DRAFT_2653at 2691.037 kb on - strand, within EX28DRAFT_2653at 2691.037 kb on - strand, within EX28DRAFT_2653at 2691.038 kb on + strand, within EX28DRAFT_2653at 2691.039 kb on - strand, within EX28DRAFT_2653at 2691.120 kb on - strand, within EX28DRAFT_2653at 2691.123 kb on + strand, within EX28DRAFT_2653at 2691.123 kb on + strand, within EX28DRAFT_2653at 2691.124 kb on - strand, within EX28DRAFT_2653at 2691.125 kb on + strand, within EX28DRAFT_2653at 2691.265 kb on - strand, within EX28DRAFT_2653at 2691.300 kb on + strandat 2691.386 kb on + strandat 2691.387 kb on - strandat 2691.608 kb on + strand, within EX28DRAFT_2654at 2691.684 kb on - strand, within EX28DRAFT_2654at 2691.684 kb on - strand, within EX28DRAFT_2654at 2691.694 kb on + strand, within EX28DRAFT_2654at 2691.695 kb on - strand, within EX28DRAFT_2654at 2691.780 kb on + strand, within EX28DRAFT_2654at 2691.781 kb on - strand, within EX28DRAFT_2654at 2691.782 kb on + strand, within EX28DRAFT_2654at 2691.783 kb on - strand, within EX28DRAFT_2654

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,689,182 + EX28DRAFT_2651 0.75 -3.1
2,689,182 + EX28DRAFT_2651 0.75 -1.7
2,689,183 - EX28DRAFT_2651 0.75 -3.1
2,689,331 - EX28DRAFT_2651 0.88 +0.2
2,689,331 - EX28DRAFT_2651 0.88 -2.4
2,689,331 - EX28DRAFT_2651 0.88 -3.5
2,689,368 - -1.1
2,689,368 - +0.7
2,689,543 + +0.2
2,689,544 - +0.7
2,689,649 - +0.6
2,689,750 - -0.3
2,689,839 + -0.5
2,689,839 + -1.3
2,689,841 + +0.1
2,689,853 + +0.8
2,689,857 - -0.1
2,689,857 - +0.2
2,689,870 - -0.5
2,689,893 + EX28DRAFT_2652 0.12 -0.4
2,689,893 + EX28DRAFT_2652 0.12 -0.6
2,689,894 - EX28DRAFT_2652 0.12 -0.8
2,689,894 - EX28DRAFT_2652 0.12 -1.3
2,689,932 + EX28DRAFT_2652 0.16 -1.1
2,689,933 - EX28DRAFT_2652 0.16 +0.2
2,689,933 - EX28DRAFT_2652 0.16 -0.1
2,690,016 - EX28DRAFT_2652 0.24 +0.2
2,690,144 + EX28DRAFT_2652 0.36 -0.1
2,690,145 - EX28DRAFT_2652 0.36 -0.8
2,690,277 + EX28DRAFT_2652 0.48 +0.2
2,690,278 - EX28DRAFT_2652 0.49 -0.0
2,690,346 + EX28DRAFT_2652 0.55 +0.1
2,690,346 + EX28DRAFT_2652 0.55 -2.2
2,690,347 - EX28DRAFT_2652 0.55 +0.6
2,690,473 - EX28DRAFT_2652 0.67 +0.4
2,690,490 + EX28DRAFT_2652 0.69 +0.2
2,690,505 + EX28DRAFT_2652 0.70 +0.1
2,690,523 - EX28DRAFT_2652 0.72 +0.2
2,690,583 + EX28DRAFT_2652 0.77 -0.5
2,690,676 + EX28DRAFT_2652 0.86 +0.3
2,690,676 - EX28DRAFT_2652 0.86 +0.2
2,690,802 - +0.3
2,690,808 + +0.1
2,690,809 - -1.1
2,690,869 + +0.3
2,690,870 - -0.1
2,690,870 - -0.7
2,690,927 + +0.7
2,691,036 + EX28DRAFT_2653 0.27 +1.5
2,691,037 - EX28DRAFT_2653 0.27 +1.1
2,691,037 - EX28DRAFT_2653 0.27 +2.5
2,691,037 - EX28DRAFT_2653 0.27 +1.5
2,691,037 - EX28DRAFT_2653 0.27 +2.7
2,691,038 + EX28DRAFT_2653 0.27 +1.3
2,691,039 - EX28DRAFT_2653 0.27 +1.8
2,691,120 - EX28DRAFT_2653 0.48 +1.8
2,691,123 + EX28DRAFT_2653 0.48 +0.8
2,691,123 + EX28DRAFT_2653 0.48 +2.2
2,691,124 - EX28DRAFT_2653 0.49 +1.5
2,691,125 + EX28DRAFT_2653 0.49 +3.3
2,691,265 - EX28DRAFT_2653 0.84 +1.7
2,691,300 + +1.5
2,691,386 + +0.7
2,691,387 - +0.2
2,691,608 + EX28DRAFT_2654 0.18 -0.1
2,691,684 - EX28DRAFT_2654 0.24 +0.4
2,691,684 - EX28DRAFT_2654 0.24 -0.2
2,691,694 + EX28DRAFT_2654 0.25 +0.0
2,691,695 - EX28DRAFT_2654 0.25 +0.6
2,691,780 + EX28DRAFT_2654 0.31 +0.6
2,691,781 - EX28DRAFT_2654 0.32 +0.4
2,691,782 + EX28DRAFT_2654 0.32 -1.4
2,691,783 - EX28DRAFT_2654 0.32 +0.6

Or see this region's nucleotide sequence