Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2613

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2611 and EX28DRAFT_2612 are separated by 123 nucleotidesEX28DRAFT_2612 and EX28DRAFT_2613 are separated by 179 nucleotidesEX28DRAFT_2613 and EX28DRAFT_2614 are separated by 49 nucleotides EX28DRAFT_2611: EX28DRAFT_2611 - AraC-type DNA-binding domain-containing proteins, at 2,649,143 to 2,649,547 _2611 EX28DRAFT_2612: EX28DRAFT_2612 - transcriptional regulator, TetR family, at 2,649,671 to 2,650,315 _2612 EX28DRAFT_2613: EX28DRAFT_2613 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,650,495 to 2,651,991 _2613 EX28DRAFT_2614: EX28DRAFT_2614 - Multidrug resistance efflux pump, at 2,652,041 to 2,653,183 _2614 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -1 0 1at 2649.547 kb on + strandat 2650.316 kb on - strandat 2650.389 kb on + strandat 2650.390 kb on - strandat 2650.390 kb on - strandat 2650.393 kb on - strandat 2650.393 kb on - strandat 2650.495 kb on - strandat 2650.554 kb on + strandat 2650.554 kb on + strandat 2650.555 kb on - strandat 2650.580 kb on + strandat 2650.581 kb on - strandat 2650.581 kb on - strandat 2650.615 kb on - strandat 2650.659 kb on + strand, within EX28DRAFT_2613at 2650.680 kb on + strand, within EX28DRAFT_2613at 2650.804 kb on - strand, within EX28DRAFT_2613at 2650.896 kb on + strand, within EX28DRAFT_2613at 2650.916 kb on - strand, within EX28DRAFT_2613at 2650.916 kb on - strand, within EX28DRAFT_2613at 2650.916 kb on - strand, within EX28DRAFT_2613at 2650.921 kb on + strand, within EX28DRAFT_2613at 2650.922 kb on - strand, within EX28DRAFT_2613at 2650.922 kb on - strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.101 kb on - strand, within EX28DRAFT_2613at 2651.101 kb on - strand, within EX28DRAFT_2613at 2651.132 kb on + strand, within EX28DRAFT_2613at 2651.132 kb on + strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.134 kb on + strand, within EX28DRAFT_2613at 2651.134 kb on + strand, within EX28DRAFT_2613at 2651.135 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.288 kb on + strand, within EX28DRAFT_2613at 2651.289 kb on - strand, within EX28DRAFT_2613at 2651.289 kb on - strand, within EX28DRAFT_2613at 2651.412 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.675 kb on - strand, within EX28DRAFT_2613at 2651.833 kb on + strand, within EX28DRAFT_2613at 2651.915 kb on + strandat 2651.973 kb on + strandat 2652.016 kb on - strandat 2652.019 kb on + strandat 2652.114 kb on + strandat 2652.122 kb on + strandat 2652.122 kb on + strandat 2652.212 kb on + strand, within EX28DRAFT_2614at 2652.329 kb on - strand, within EX28DRAFT_2614at 2652.946 kb on - strand, within EX28DRAFT_2614

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,649,547 + -0.2
2,650,316 - +0.5
2,650,389 + -0.5
2,650,390 - +0.8
2,650,390 - -0.7
2,650,393 - +0.0
2,650,393 - -0.1
2,650,495 - +0.3
2,650,554 + -0.6
2,650,554 + +0.4
2,650,555 - -0.3
2,650,580 + -0.1
2,650,581 - -0.0
2,650,581 - -0.0
2,650,615 - -1.0
2,650,659 + EX28DRAFT_2613 0.11 +0.2
2,650,680 + EX28DRAFT_2613 0.12 -0.1
2,650,804 - EX28DRAFT_2613 0.21 -1.0
2,650,896 + EX28DRAFT_2613 0.27 +0.5
2,650,916 - EX28DRAFT_2613 0.28 +0.6
2,650,916 - EX28DRAFT_2613 0.28 +0.3
2,650,916 - EX28DRAFT_2613 0.28 -0.0
2,650,921 + EX28DRAFT_2613 0.28 -0.4
2,650,922 - EX28DRAFT_2613 0.29 +0.0
2,650,922 - EX28DRAFT_2613 0.29 -0.6
2,651,100 + EX28DRAFT_2613 0.40 -0.6
2,651,100 + EX28DRAFT_2613 0.40 +0.0
2,651,100 + EX28DRAFT_2613 0.40 -0.3
2,651,100 + EX28DRAFT_2613 0.40 -0.4
2,651,100 + EX28DRAFT_2613 0.40 -0.8
2,651,100 + EX28DRAFT_2613 0.40 -0.7
2,651,101 - EX28DRAFT_2613 0.40 +0.1
2,651,101 - EX28DRAFT_2613 0.40 +0.2
2,651,132 + EX28DRAFT_2613 0.43 -0.4
2,651,132 + EX28DRAFT_2613 0.43 -0.2
2,651,133 - EX28DRAFT_2613 0.43 -0.4
2,651,133 - EX28DRAFT_2613 0.43 +0.4
2,651,133 - EX28DRAFT_2613 0.43 -0.4
2,651,133 - EX28DRAFT_2613 0.43 +0.7
2,651,133 - EX28DRAFT_2613 0.43 -0.3
2,651,134 + EX28DRAFT_2613 0.43 -0.1
2,651,134 + EX28DRAFT_2613 0.43 +0.2
2,651,135 - EX28DRAFT_2613 0.43 +0.4
2,651,172 - EX28DRAFT_2613 0.45 -0.1
2,651,172 - EX28DRAFT_2613 0.45 -0.7
2,651,172 - EX28DRAFT_2613 0.45 +0.6
2,651,288 + EX28DRAFT_2613 0.53 -0.3
2,651,289 - EX28DRAFT_2613 0.53 -0.6
2,651,289 - EX28DRAFT_2613 0.53 +0.2
2,651,412 + EX28DRAFT_2613 0.61 -0.1
2,651,562 + EX28DRAFT_2613 0.71 -0.1
2,651,562 + EX28DRAFT_2613 0.71 -0.1
2,651,562 + EX28DRAFT_2613 0.71 -0.4
2,651,675 - EX28DRAFT_2613 0.79 +0.3
2,651,833 + EX28DRAFT_2613 0.89 -0.4
2,651,915 + +0.1
2,651,973 + -0.0
2,652,016 - +0.4
2,652,019 + +0.2
2,652,114 + -0.0
2,652,122 + -0.0
2,652,122 + -0.1
2,652,212 + EX28DRAFT_2614 0.15 -0.2
2,652,329 - EX28DRAFT_2614 0.25 -0.1
2,652,946 - EX28DRAFT_2614 0.79 -0.6

Or see this region's nucleotide sequence