Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2460 and EX28DRAFT_2461 are separated by 84 nucleotides EX28DRAFT_2461 and EX28DRAFT_2462 are separated by 125 nucleotides
EX28DRAFT_2460: EX28DRAFT_2460 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 2,488,630 to 2,489,697
_2460
EX28DRAFT_2461: EX28DRAFT_2461 - tRNA 2-selenouridine synthase, at 2,489,782 to 2,490,852
_2461
EX28DRAFT_2462: EX28DRAFT_2462 - hypothetical protein, at 2,490,978 to 2,492,123
_2462
Position (kb)
2489
2490
2491 Strain fitness (log2 ratio)
-1
0
1 at 2489.254 kb on - strand, within EX28DRAFT_2460 at 2489.284 kb on + strand, within EX28DRAFT_2460 at 2489.569 kb on - strand, within EX28DRAFT_2460 at 2489.695 kb on + strand at 2489.696 kb on - strand at 2489.738 kb on + strand at 2489.738 kb on + strand at 2489.739 kb on - strand at 2489.935 kb on + strand, within EX28DRAFT_2461 at 2489.935 kb on + strand, within EX28DRAFT_2461 at 2489.935 kb on + strand, within EX28DRAFT_2461 at 2490.087 kb on + strand, within EX28DRAFT_2461 at 2490.088 kb on - strand, within EX28DRAFT_2461 at 2490.148 kb on - strand, within EX28DRAFT_2461 at 2490.148 kb on - strand, within EX28DRAFT_2461 at 2490.529 kb on + strand, within EX28DRAFT_2461 at 2490.601 kb on + strand, within EX28DRAFT_2461 at 2490.754 kb on + strand at 2490.755 kb on - strand at 2490.757 kb on + strand at 2490.758 kb on - strand at 2490.769 kb on + strand at 2490.908 kb on + strand at 2490.968 kb on - strand at 2490.968 kb on - strand at 2490.968 kb on - strand at 2490.979 kb on + strand at 2491.115 kb on - strand, within EX28DRAFT_2462 at 2491.132 kb on + strand, within EX28DRAFT_2462 at 2491.133 kb on - strand, within EX28DRAFT_2462 at 2491.133 kb on - strand, within EX28DRAFT_2462 at 2491.139 kb on + strand, within EX28DRAFT_2462 at 2491.140 kb on - strand, within EX28DRAFT_2462 at 2491.156 kb on + strand, within EX28DRAFT_2462 at 2491.172 kb on + strand, within EX28DRAFT_2462 at 2491.173 kb on - strand, within EX28DRAFT_2462 at 2491.361 kb on - strand, within EX28DRAFT_2462 at 2491.408 kb on + strand, within EX28DRAFT_2462 at 2491.408 kb on + strand, within EX28DRAFT_2462 at 2491.409 kb on - strand, within EX28DRAFT_2462 at 2491.510 kb on + strand, within EX28DRAFT_2462 at 2491.511 kb on - strand, within EX28DRAFT_2462 at 2491.531 kb on + strand, within EX28DRAFT_2462 at 2491.540 kb on + strand, within EX28DRAFT_2462 at 2491.540 kb on + strand, within EX28DRAFT_2462 at 2491.540 kb on + strand, within EX28DRAFT_2462 at 2491.540 kb on + strand, within EX28DRAFT_2462 at 2491.541 kb on - strand, within EX28DRAFT_2462 at 2491.541 kb on - strand, within EX28DRAFT_2462 at 2491.541 kb on - strand, within EX28DRAFT_2462 at 2491.568 kb on + strand, within EX28DRAFT_2462 at 2491.569 kb on - strand, within EX28DRAFT_2462 at 2491.606 kb on + strand, within EX28DRAFT_2462 at 2491.651 kb on + strand, within EX28DRAFT_2462 at 2491.652 kb on - strand, within EX28DRAFT_2462 at 2491.687 kb on + strand, within EX28DRAFT_2462 at 2491.687 kb on + strand, within EX28DRAFT_2462 at 2491.688 kb on - strand, within EX28DRAFT_2462 at 2491.691 kb on - strand, within EX28DRAFT_2462 at 2491.750 kb on + strand, within EX28DRAFT_2462 at 2491.758 kb on - strand, within EX28DRAFT_2462 at 2491.758 kb on - strand, within EX28DRAFT_2462 at 2491.790 kb on - strand, within EX28DRAFT_2462 at 2491.821 kb on - strand, within EX28DRAFT_2462 at 2491.841 kb on - strand, within EX28DRAFT_2462 at 2491.841 kb on - strand, within EX28DRAFT_2462
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,489,254 - EX28DRAFT_2460 0.58 +1.7 2,489,284 + EX28DRAFT_2460 0.61 +1.7 2,489,569 - EX28DRAFT_2460 0.88 -0.6 2,489,695 + +0.2 2,489,696 - +0.1 2,489,738 + +0.5 2,489,738 + +0.4 2,489,739 - -0.5 2,489,935 + EX28DRAFT_2461 0.14 +0.1 2,489,935 + EX28DRAFT_2461 0.14 +0.3 2,489,935 + EX28DRAFT_2461 0.14 -0.1 2,490,087 + EX28DRAFT_2461 0.28 -0.0 2,490,088 - EX28DRAFT_2461 0.29 -0.1 2,490,148 - EX28DRAFT_2461 0.34 -1.1 2,490,148 - EX28DRAFT_2461 0.34 -0.8 2,490,529 + EX28DRAFT_2461 0.70 -0.7 2,490,601 + EX28DRAFT_2461 0.76 -0.2 2,490,754 + +0.4 2,490,755 - -0.2 2,490,757 + -0.7 2,490,758 - -0.0 2,490,769 + +0.3 2,490,908 + +0.8 2,490,968 - -0.7 2,490,968 - +0.5 2,490,968 - -0.3 2,490,979 + +0.1 2,491,115 - EX28DRAFT_2462 0.12 -0.4 2,491,132 + EX28DRAFT_2462 0.13 +1.3 2,491,133 - EX28DRAFT_2462 0.14 -0.9 2,491,133 - EX28DRAFT_2462 0.14 +0.4 2,491,139 + EX28DRAFT_2462 0.14 +0.5 2,491,140 - EX28DRAFT_2462 0.14 -0.1 2,491,156 + EX28DRAFT_2462 0.16 +0.4 2,491,172 + EX28DRAFT_2462 0.17 -0.1 2,491,173 - EX28DRAFT_2462 0.17 -0.3 2,491,361 - EX28DRAFT_2462 0.33 -1.3 2,491,408 + EX28DRAFT_2462 0.38 +0.1 2,491,408 + EX28DRAFT_2462 0.38 +0.1 2,491,409 - EX28DRAFT_2462 0.38 -0.5 2,491,510 + EX28DRAFT_2462 0.46 +0.3 2,491,511 - EX28DRAFT_2462 0.47 +0.5 2,491,531 + EX28DRAFT_2462 0.48 -0.4 2,491,540 + EX28DRAFT_2462 0.49 -0.1 2,491,540 + EX28DRAFT_2462 0.49 -1.0 2,491,540 + EX28DRAFT_2462 0.49 -0.0 2,491,540 + EX28DRAFT_2462 0.49 +0.4 2,491,541 - EX28DRAFT_2462 0.49 -0.8 2,491,541 - EX28DRAFT_2462 0.49 +0.1 2,491,541 - EX28DRAFT_2462 0.49 -0.7 2,491,568 + EX28DRAFT_2462 0.51 +0.9 2,491,569 - EX28DRAFT_2462 0.52 -0.7 2,491,606 + EX28DRAFT_2462 0.55 +0.0 2,491,651 + EX28DRAFT_2462 0.59 +0.8 2,491,652 - EX28DRAFT_2462 0.59 +0.6 2,491,687 + EX28DRAFT_2462 0.62 +0.3 2,491,687 + EX28DRAFT_2462 0.62 -0.3 2,491,688 - EX28DRAFT_2462 0.62 -0.4 2,491,691 - EX28DRAFT_2462 0.62 -0.8 2,491,750 + EX28DRAFT_2462 0.67 -0.7 2,491,758 - EX28DRAFT_2462 0.68 -0.5 2,491,758 - EX28DRAFT_2462 0.68 +0.2 2,491,790 - EX28DRAFT_2462 0.71 +0.2 2,491,821 - EX28DRAFT_2462 0.74 +1.2 2,491,841 - EX28DRAFT_2462 0.75 -1.6 2,491,841 - EX28DRAFT_2462 0.75 -0.3
Or see this region's nucleotide sequence