Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2449 and EX28DRAFT_2450 are separated by 1 nucleotides EX28DRAFT_2450 and EX28DRAFT_2451 are separated by 234 nucleotides
EX28DRAFT_2449: EX28DRAFT_2449 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 2,479,975 to 2,480,841
_2449
EX28DRAFT_2450: EX28DRAFT_2450 - Uncharacterized conserved protein, at 2,480,843 to 2,481,055
_2450
EX28DRAFT_2451: EX28DRAFT_2451 - PTS system, glucose-like IIB component, at 2,481,290 to 2,482,789
_2451
Position (kb)
2480
2481
2482 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2479.927 kb on + strand at 2480.818 kb on + strand at 2480.818 kb on + strand at 2480.840 kb on - strand at 2480.958 kb on + strand, within EX28DRAFT_2450 at 2480.959 kb on - strand, within EX28DRAFT_2450 at 2480.976 kb on + strand, within EX28DRAFT_2450 at 2481.040 kb on - strand at 2481.116 kb on - strand at 2481.152 kb on - strand at 2481.325 kb on + strand at 2481.332 kb on + strand at 2481.351 kb on + strand at 2481.406 kb on + strand at 2481.407 kb on - strand at 2481.455 kb on - strand, within EX28DRAFT_2451 at 2481.611 kb on + strand, within EX28DRAFT_2451 at 2481.692 kb on + strand, within EX28DRAFT_2451 at 2481.693 kb on - strand, within EX28DRAFT_2451 at 2481.693 kb on - strand, within EX28DRAFT_2451 at 2481.821 kb on - strand, within EX28DRAFT_2451 at 2481.972 kb on - strand, within EX28DRAFT_2451
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,479,927 + -2.8 2,480,818 + -0.9 2,480,818 + -1.8 2,480,840 - -0.9 2,480,958 + EX28DRAFT_2450 0.54 -0.2 2,480,959 - EX28DRAFT_2450 0.54 -0.1 2,480,976 + EX28DRAFT_2450 0.62 -0.6 2,481,040 - +0.3 2,481,116 - -0.6 2,481,152 - +0.3 2,481,325 + -0.4 2,481,332 + -0.1 2,481,351 + +0.4 2,481,406 + -3.9 2,481,407 - -1.4 2,481,455 - EX28DRAFT_2451 0.11 +0.0 2,481,611 + EX28DRAFT_2451 0.21 +0.9 2,481,692 + EX28DRAFT_2451 0.27 -0.2 2,481,693 - EX28DRAFT_2451 0.27 +0.6 2,481,693 - EX28DRAFT_2451 0.27 -0.2 2,481,821 - EX28DRAFT_2451 0.35 +0.4 2,481,972 - EX28DRAFT_2451 0.45 -0.4
Or see this region's nucleotide sequence