Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2400 and EX28DRAFT_2401 are separated by 131 nucleotides EX28DRAFT_2401 and EX28DRAFT_2402 are separated by 20 nucleotides EX28DRAFT_2402 and EX28DRAFT_2403 are separated by 13 nucleotides EX28DRAFT_2403 and EX28DRAFT_2404 are separated by 105 nucleotides
EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476
_2400
EX28DRAFT_2401: EX28DRAFT_2401 - acetoin reductases, at 2,426,608 to 2,427,378
_2401
EX28DRAFT_2402: EX28DRAFT_2402 - acetolactate synthase, large subunit (EC 2.2.1.6), at 2,427,399 to 2,429,078
_2402
EX28DRAFT_2403: EX28DRAFT_2403 - alpha-acetolactate decarboxylase, at 2,429,092 to 2,429,871
_2403
EX28DRAFT_2404: EX28DRAFT_2404 - Transcriptional regulator, at 2,429,977 to 2,430,858
_2404
Position (kb)
2427
2428
2429
2430 Strain fitness (log2 ratio)
-2
-1
0
1 at 2426.429 kb on - strand at 2426.444 kb on - strand at 2426.467 kb on + strand at 2426.468 kb on - strand at 2426.508 kb on - strand at 2426.508 kb on - strand at 2426.529 kb on + strand at 2426.530 kb on - strand at 2426.530 kb on - strand at 2426.599 kb on + strand at 2426.602 kb on + strand at 2426.602 kb on + strand at 2426.613 kb on + strand at 2426.635 kb on + strand at 2426.658 kb on - strand at 2426.682 kb on - strand at 2427.060 kb on - strand, within EX28DRAFT_2401 at 2427.181 kb on + strand, within EX28DRAFT_2401 at 2427.182 kb on - strand, within EX28DRAFT_2401 at 2427.276 kb on + strand, within EX28DRAFT_2401 at 2427.278 kb on + strand, within EX28DRAFT_2401 at 2427.278 kb on + strand, within EX28DRAFT_2401 at 2427.279 kb on - strand, within EX28DRAFT_2401 at 2427.568 kb on + strand, within EX28DRAFT_2402 at 2427.569 kb on - strand, within EX28DRAFT_2402 at 2427.569 kb on - strand, within EX28DRAFT_2402 at 2427.650 kb on - strand, within EX28DRAFT_2402 at 2427.650 kb on - strand, within EX28DRAFT_2402 at 2427.863 kb on - strand, within EX28DRAFT_2402 at 2427.863 kb on - strand, within EX28DRAFT_2402 at 2427.868 kb on + strand, within EX28DRAFT_2402 at 2428.067 kb on + strand, within EX28DRAFT_2402 at 2428.138 kb on + strand, within EX28DRAFT_2402 at 2428.138 kb on + strand, within EX28DRAFT_2402 at 2428.138 kb on + strand, within EX28DRAFT_2402 at 2428.139 kb on - strand, within EX28DRAFT_2402 at 2428.139 kb on - strand, within EX28DRAFT_2402 at 2428.139 kb on - strand, within EX28DRAFT_2402 at 2428.142 kb on + strand, within EX28DRAFT_2402 at 2428.142 kb on + strand, within EX28DRAFT_2402 at 2428.142 kb on + strand, within EX28DRAFT_2402 at 2428.142 kb on + strand, within EX28DRAFT_2402 at 2428.143 kb on - strand, within EX28DRAFT_2402 at 2428.245 kb on - strand, within EX28DRAFT_2402 at 2428.354 kb on + strand, within EX28DRAFT_2402 at 2428.355 kb on - strand, within EX28DRAFT_2402 at 2428.355 kb on - strand, within EX28DRAFT_2402 at 2428.440 kb on + strand, within EX28DRAFT_2402 at 2428.441 kb on - strand, within EX28DRAFT_2402 at 2428.441 kb on - strand, within EX28DRAFT_2402 at 2428.441 kb on - strand, within EX28DRAFT_2402 at 2428.569 kb on - strand, within EX28DRAFT_2402 at 2428.678 kb on + strand, within EX28DRAFT_2402 at 2428.679 kb on - strand, within EX28DRAFT_2402 at 2429.094 kb on - strand at 2429.640 kb on - strand, within EX28DRAFT_2403 at 2429.755 kb on + strand, within EX28DRAFT_2403 at 2429.770 kb on + strand, within EX28DRAFT_2403 at 2429.894 kb on - strand at 2429.945 kb on + strand at 2429.946 kb on - strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.972 kb on + strand at 2429.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,426,429 - -0.1 2,426,444 - +0.2 2,426,467 + +0.0 2,426,468 - -0.3 2,426,508 - +0.1 2,426,508 - -0.2 2,426,529 + +0.1 2,426,530 - +0.1 2,426,530 - -0.4 2,426,599 + +0.2 2,426,602 + +0.2 2,426,602 + -0.1 2,426,613 + +0.2 2,426,635 + +0.3 2,426,658 - +0.2 2,426,682 - +0.3 2,427,060 - EX28DRAFT_2401 0.59 +0.1 2,427,181 + EX28DRAFT_2401 0.74 +0.1 2,427,182 - EX28DRAFT_2401 0.74 -0.1 2,427,276 + EX28DRAFT_2401 0.87 +1.7 2,427,278 + EX28DRAFT_2401 0.87 -0.1 2,427,278 + EX28DRAFT_2401 0.87 -1.1 2,427,279 - EX28DRAFT_2401 0.87 -0.1 2,427,568 + EX28DRAFT_2402 0.10 -0.3 2,427,569 - EX28DRAFT_2402 0.10 +0.4 2,427,569 - EX28DRAFT_2402 0.10 +0.1 2,427,650 - EX28DRAFT_2402 0.15 -0.3 2,427,650 - EX28DRAFT_2402 0.15 -1.8 2,427,863 - EX28DRAFT_2402 0.28 -0.3 2,427,863 - EX28DRAFT_2402 0.28 -0.3 2,427,868 + EX28DRAFT_2402 0.28 -0.1 2,428,067 + EX28DRAFT_2402 0.40 -0.2 2,428,138 + EX28DRAFT_2402 0.44 +0.7 2,428,138 + EX28DRAFT_2402 0.44 -0.4 2,428,138 + EX28DRAFT_2402 0.44 -0.5 2,428,139 - EX28DRAFT_2402 0.44 -0.9 2,428,139 - EX28DRAFT_2402 0.44 -0.1 2,428,139 - EX28DRAFT_2402 0.44 +0.5 2,428,142 + EX28DRAFT_2402 0.44 -0.2 2,428,142 + EX28DRAFT_2402 0.44 -0.3 2,428,142 + EX28DRAFT_2402 0.44 -0.2 2,428,142 + EX28DRAFT_2402 0.44 +0.3 2,428,143 - EX28DRAFT_2402 0.44 -0.5 2,428,245 - EX28DRAFT_2402 0.50 +0.1 2,428,354 + EX28DRAFT_2402 0.57 +0.4 2,428,355 - EX28DRAFT_2402 0.57 -0.6 2,428,355 - EX28DRAFT_2402 0.57 -0.1 2,428,440 + EX28DRAFT_2402 0.62 -0.6 2,428,441 - EX28DRAFT_2402 0.62 +0.0 2,428,441 - EX28DRAFT_2402 0.62 -0.4 2,428,441 - EX28DRAFT_2402 0.62 -0.6 2,428,569 - EX28DRAFT_2402 0.70 -1.0 2,428,678 + EX28DRAFT_2402 0.76 -0.3 2,428,679 - EX28DRAFT_2402 0.76 -0.8 2,429,094 - -0.2 2,429,640 - EX28DRAFT_2403 0.70 +0.2 2,429,755 + EX28DRAFT_2403 0.85 +0.4 2,429,770 + EX28DRAFT_2403 0.87 -0.1 2,429,894 - +0.5 2,429,945 + -0.4 2,429,946 - +0.2 2,429,972 + -1.1 2,429,972 + +1.0 2,429,972 + +0.1 2,429,973 - -0.5
Or see this region's nucleotide sequence