Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2212 and EX28DRAFT_2213 overlap by 38 nucleotides EX28DRAFT_2213 and EX28DRAFT_2214 overlap by 23 nucleotides EX28DRAFT_2214 and EX28DRAFT_2215 overlap by 17 nucleotides
EX28DRAFT_2212: EX28DRAFT_2212 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,235,887 to 2,236,609
_2212
EX28DRAFT_2213: EX28DRAFT_2213 - dethiobiotin synthase, at 2,236,572 to 2,237,288
_2213
EX28DRAFT_2214: EX28DRAFT_2214 - malonyl-acyl carrier protein O-methyltransferase BioC, at 2,237,266 to 2,238,021
_2214
EX28DRAFT_2215: EX28DRAFT_2215 - 8-amino-7-oxononanoate synthase, at 2,238,005 to 2,239,162
_2215
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2236.268 kb on + strand, within EX28DRAFT_2212 at 2236.446 kb on + strand, within EX28DRAFT_2212 at 2236.447 kb on - strand, within EX28DRAFT_2212 at 2236.531 kb on + strand, within EX28DRAFT_2212 at 2236.712 kb on - strand, within EX28DRAFT_2213 at 2237.163 kb on - strand, within EX28DRAFT_2213 at 2237.163 kb on - strand, within EX28DRAFT_2213 at 2237.260 kb on + strand at 2237.524 kb on + strand, within EX28DRAFT_2214 at 2237.963 kb on + strand at 2237.964 kb on - strand at 2237.964 kb on - strand at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.268 kb on + strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215 at 2238.269 kb on - strand, within EX28DRAFT_2215 at 2238.373 kb on - strand, within EX28DRAFT_2215 at 2238.919 kb on - strand, within EX28DRAFT_2215
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,236,268 + EX28DRAFT_2212 0.53 +0.2 2,236,446 + EX28DRAFT_2212 0.77 +0.1 2,236,447 - EX28DRAFT_2212 0.77 +0.4 2,236,531 + EX28DRAFT_2212 0.89 -0.3 2,236,712 - EX28DRAFT_2213 0.20 -1.4 2,237,163 - EX28DRAFT_2213 0.82 -2.5 2,237,163 - EX28DRAFT_2213 0.82 -3.3 2,237,260 + -0.8 2,237,524 + EX28DRAFT_2214 0.34 -1.6 2,237,963 + -0.3 2,237,964 - +0.3 2,237,964 - -0.5 2,238,268 + EX28DRAFT_2215 0.23 -2.0 2,238,268 + EX28DRAFT_2215 0.23 -1.9 2,238,269 - EX28DRAFT_2215 0.23 -0.9 2,238,269 - EX28DRAFT_2215 0.23 -0.6 2,238,373 - EX28DRAFT_2215 0.32 -1.1 2,238,919 - EX28DRAFT_2215 0.79 -1.1
Or see this region's nucleotide sequence