Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2140 and EX28DRAFT_2141 are separated by 4 nucleotides EX28DRAFT_2141 and EX28DRAFT_2142 are separated by 192 nucleotides
EX28DRAFT_2140: EX28DRAFT_2140 - glycyl-radical enzyme activating protein, at 2,160,062 to 2,160,961
_2140
EX28DRAFT_2141: EX28DRAFT_2141 - glycyl radical enzyme, PFL2/glycerol dehydratase family, at 2,160,966 to 2,163,398
_2141
EX28DRAFT_2142: EX28DRAFT_2142 - HAD-superfamily hydrolase, subfamily IIB, at 2,163,591 to 2,164,406
_2142
Position (kb)
2160
2161
2162
2163
2164 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2160.419 kb on + strand, within EX28DRAFT_2140 at 2160.465 kb on - strand, within EX28DRAFT_2140 at 2160.465 kb on - strand, within EX28DRAFT_2140 at 2160.465 kb on - strand, within EX28DRAFT_2140 at 2160.466 kb on + strand, within EX28DRAFT_2140 at 2160.467 kb on - strand, within EX28DRAFT_2140 at 2160.560 kb on + strand, within EX28DRAFT_2140 at 2160.560 kb on + strand, within EX28DRAFT_2140 at 2160.561 kb on - strand, within EX28DRAFT_2140 at 2160.577 kb on - strand, within EX28DRAFT_2140 at 2160.766 kb on + strand, within EX28DRAFT_2140 at 2160.803 kb on - strand, within EX28DRAFT_2140 at 2160.842 kb on + strand, within EX28DRAFT_2140 at 2160.843 kb on - strand, within EX28DRAFT_2140 at 2160.864 kb on - strand, within EX28DRAFT_2140 at 2160.921 kb on - strand at 2161.004 kb on + strand at 2161.005 kb on - strand at 2161.071 kb on + strand at 2161.071 kb on + strand at 2161.083 kb on + strand at 2161.234 kb on - strand, within EX28DRAFT_2141 at 2161.771 kb on - strand, within EX28DRAFT_2141 at 2161.840 kb on - strand, within EX28DRAFT_2141 at 2161.855 kb on - strand, within EX28DRAFT_2141 at 2162.265 kb on + strand, within EX28DRAFT_2141 at 2162.496 kb on + strand, within EX28DRAFT_2141 at 2162.497 kb on - strand, within EX28DRAFT_2141 at 2162.562 kb on - strand, within EX28DRAFT_2141 at 2162.632 kb on - strand, within EX28DRAFT_2141 at 2162.818 kb on - strand, within EX28DRAFT_2141 at 2162.871 kb on + strand, within EX28DRAFT_2141 at 2162.872 kb on - strand, within EX28DRAFT_2141 at 2162.872 kb on - strand, within EX28DRAFT_2141 at 2162.892 kb on + strand, within EX28DRAFT_2141 at 2162.938 kb on - strand, within EX28DRAFT_2141 at 2163.008 kb on + strand, within EX28DRAFT_2141 at 2163.008 kb on + strand, within EX28DRAFT_2141 at 2163.008 kb on + strand, within EX28DRAFT_2141 at 2163.104 kb on + strand, within EX28DRAFT_2141 at 2163.234 kb on - strand at 2163.241 kb on - strand at 2163.325 kb on - strand at 2163.368 kb on + strand at 2163.368 kb on + strand at 2163.390 kb on - strand at 2163.390 kb on - strand at 2163.405 kb on - strand at 2163.555 kb on - strand at 2163.591 kb on - strand at 2163.591 kb on - strand at 2163.735 kb on + strand, within EX28DRAFT_2142 at 2163.735 kb on + strand, within EX28DRAFT_2142 at 2163.735 kb on + strand, within EX28DRAFT_2142 at 2163.979 kb on - strand, within EX28DRAFT_2142 at 2164.032 kb on - strand, within EX28DRAFT_2142 at 2164.032 kb on - strand, within EX28DRAFT_2142
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,160,419 + EX28DRAFT_2140 0.40 +1.8 2,160,465 - EX28DRAFT_2140 0.45 +0.7 2,160,465 - EX28DRAFT_2140 0.45 -0.2 2,160,465 - EX28DRAFT_2140 0.45 +0.0 2,160,466 + EX28DRAFT_2140 0.45 -0.0 2,160,467 - EX28DRAFT_2140 0.45 +0.1 2,160,560 + EX28DRAFT_2140 0.55 -0.2 2,160,560 + EX28DRAFT_2140 0.55 +0.3 2,160,561 - EX28DRAFT_2140 0.55 -0.4 2,160,577 - EX28DRAFT_2140 0.57 -0.3 2,160,766 + EX28DRAFT_2140 0.78 +0.0 2,160,803 - EX28DRAFT_2140 0.82 -2.2 2,160,842 + EX28DRAFT_2140 0.87 +0.1 2,160,843 - EX28DRAFT_2140 0.87 -0.2 2,160,864 - EX28DRAFT_2140 0.89 +0.6 2,160,921 - +0.1 2,161,004 + +0.6 2,161,005 - -0.4 2,161,071 + +0.3 2,161,071 + +0.4 2,161,083 + -0.3 2,161,234 - EX28DRAFT_2141 0.11 +0.0 2,161,771 - EX28DRAFT_2141 0.33 -0.3 2,161,840 - EX28DRAFT_2141 0.36 -0.4 2,161,855 - EX28DRAFT_2141 0.37 -0.1 2,162,265 + EX28DRAFT_2141 0.53 -0.3 2,162,496 + EX28DRAFT_2141 0.63 -0.1 2,162,497 - EX28DRAFT_2141 0.63 -0.5 2,162,562 - EX28DRAFT_2141 0.66 -0.0 2,162,632 - EX28DRAFT_2141 0.68 -0.0 2,162,818 - EX28DRAFT_2141 0.76 -0.4 2,162,871 + EX28DRAFT_2141 0.78 +0.0 2,162,872 - EX28DRAFT_2141 0.78 +0.1 2,162,872 - EX28DRAFT_2141 0.78 +0.3 2,162,892 + EX28DRAFT_2141 0.79 -0.7 2,162,938 - EX28DRAFT_2141 0.81 +0.6 2,163,008 + EX28DRAFT_2141 0.84 -0.1 2,163,008 + EX28DRAFT_2141 0.84 -0.4 2,163,008 + EX28DRAFT_2141 0.84 +0.4 2,163,104 + EX28DRAFT_2141 0.88 -0.7 2,163,234 - -0.0 2,163,241 - +0.1 2,163,325 - +0.9 2,163,368 + +0.2 2,163,368 + +0.3 2,163,390 - +0.3 2,163,390 - +0.1 2,163,405 - +0.1 2,163,555 - +1.7 2,163,591 - +0.2 2,163,591 - +0.4 2,163,735 + EX28DRAFT_2142 0.18 -0.2 2,163,735 + EX28DRAFT_2142 0.18 +0.3 2,163,735 + EX28DRAFT_2142 0.18 -2.1 2,163,979 - EX28DRAFT_2142 0.48 +0.3 2,164,032 - EX28DRAFT_2142 0.54 -0.0 2,164,032 - EX28DRAFT_2142 0.54 -0.2
Or see this region's nucleotide sequence