Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2030 and EX28DRAFT_2031 are separated by 123 nucleotides EX28DRAFT_2031 and EX28DRAFT_2032 are separated by 51 nucleotides
EX28DRAFT_2030: EX28DRAFT_2030 - YcaO-type kinase domain, at 2,042,534 to 2,044,294
_2030
EX28DRAFT_2031: EX28DRAFT_2031 - formate transporter FocA, at 2,044,418 to 2,045,558
_2031
EX28DRAFT_2032: EX28DRAFT_2032 - formate acetyltransferase 1, at 2,045,610 to 2,047,892
_2032
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-1
0
1
2 at 2043.481 kb on + strand, within EX28DRAFT_2030 at 2043.482 kb on - strand, within EX28DRAFT_2030 at 2043.533 kb on - strand, within EX28DRAFT_2030 at 2043.533 kb on - strand, within EX28DRAFT_2030 at 2043.644 kb on + strand, within EX28DRAFT_2030 at 2043.644 kb on + strand, within EX28DRAFT_2030 at 2043.688 kb on + strand, within EX28DRAFT_2030 at 2043.714 kb on - strand, within EX28DRAFT_2030 at 2043.742 kb on + strand, within EX28DRAFT_2030 at 2043.860 kb on - strand, within EX28DRAFT_2030 at 2043.877 kb on - strand, within EX28DRAFT_2030 at 2043.911 kb on + strand, within EX28DRAFT_2030 at 2043.913 kb on + strand, within EX28DRAFT_2030 at 2044.040 kb on + strand, within EX28DRAFT_2030 at 2044.041 kb on - strand, within EX28DRAFT_2030 at 2044.041 kb on - strand, within EX28DRAFT_2030 at 2044.103 kb on + strand, within EX28DRAFT_2030 at 2044.123 kb on + strand at 2044.123 kb on + strand at 2044.302 kb on + strand at 2044.324 kb on - strand at 2044.341 kb on - strand at 2044.342 kb on + strand at 2044.428 kb on - strand at 2044.450 kb on + strand at 2044.468 kb on + strand at 2044.483 kb on - strand at 2044.483 kb on - strand at 2044.611 kb on - strand, within EX28DRAFT_2031 at 2044.612 kb on + strand, within EX28DRAFT_2031 at 2044.612 kb on + strand, within EX28DRAFT_2031 at 2044.650 kb on + strand, within EX28DRAFT_2031 at 2044.683 kb on - strand, within EX28DRAFT_2031 at 2044.806 kb on + strand, within EX28DRAFT_2031 at 2044.807 kb on - strand, within EX28DRAFT_2031 at 2044.854 kb on + strand, within EX28DRAFT_2031 at 2045.113 kb on - strand, within EX28DRAFT_2031 at 2045.184 kb on - strand, within EX28DRAFT_2031 at 2045.248 kb on - strand, within EX28DRAFT_2031 at 2045.278 kb on + strand, within EX28DRAFT_2031 at 2045.438 kb on + strand, within EX28DRAFT_2031 at 2045.441 kb on + strand, within EX28DRAFT_2031 at 2045.454 kb on - strand at 2045.506 kb on + strand at 2045.507 kb on - strand at 2045.520 kb on + strand at 2045.520 kb on + strand at 2045.521 kb on - strand at 2045.592 kb on + strand at 2045.592 kb on + strand at 2045.600 kb on + strand at 2045.601 kb on - strand at 2045.607 kb on + strand at 2045.608 kb on - strand at 2045.608 kb on - strand at 2045.608 kb on - strand at 2045.680 kb on + strand at 2045.681 kb on - strand at 2045.686 kb on + strand at 2045.686 kb on + strand at 2045.710 kb on - strand at 2045.874 kb on + strand, within EX28DRAFT_2032 at 2045.957 kb on + strand, within EX28DRAFT_2032 at 2046.140 kb on + strand, within EX28DRAFT_2032 at 2046.171 kb on + strand, within EX28DRAFT_2032 at 2046.202 kb on - strand, within EX28DRAFT_2032 at 2046.387 kb on + strand, within EX28DRAFT_2032 at 2046.388 kb on - strand, within EX28DRAFT_2032
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,043,481 + EX28DRAFT_2030 0.54 +0.1 2,043,482 - EX28DRAFT_2030 0.54 +0.1 2,043,533 - EX28DRAFT_2030 0.57 -0.7 2,043,533 - EX28DRAFT_2030 0.57 +1.8 2,043,644 + EX28DRAFT_2030 0.63 -0.0 2,043,644 + EX28DRAFT_2030 0.63 -0.0 2,043,688 + EX28DRAFT_2030 0.66 +1.2 2,043,714 - EX28DRAFT_2030 0.67 +1.0 2,043,742 + EX28DRAFT_2030 0.69 +0.4 2,043,860 - EX28DRAFT_2030 0.75 -0.0 2,043,877 - EX28DRAFT_2030 0.76 +0.4 2,043,911 + EX28DRAFT_2030 0.78 +0.7 2,043,913 + EX28DRAFT_2030 0.78 +0.4 2,044,040 + EX28DRAFT_2030 0.86 -0.4 2,044,041 - EX28DRAFT_2030 0.86 +0.2 2,044,041 - EX28DRAFT_2030 0.86 -0.4 2,044,103 + EX28DRAFT_2030 0.89 +0.6 2,044,123 + +0.9 2,044,123 + +0.1 2,044,302 + -0.6 2,044,324 - +0.3 2,044,341 - -0.9 2,044,342 + -0.2 2,044,428 - +0.3 2,044,450 + -0.4 2,044,468 + +0.2 2,044,483 - -0.8 2,044,483 - -0.1 2,044,611 - EX28DRAFT_2031 0.17 -0.3 2,044,612 + EX28DRAFT_2031 0.17 -0.0 2,044,612 + EX28DRAFT_2031 0.17 +0.4 2,044,650 + EX28DRAFT_2031 0.20 +0.1 2,044,683 - EX28DRAFT_2031 0.23 -0.4 2,044,806 + EX28DRAFT_2031 0.34 -0.7 2,044,807 - EX28DRAFT_2031 0.34 +0.6 2,044,854 + EX28DRAFT_2031 0.38 +0.1 2,045,113 - EX28DRAFT_2031 0.61 +1.4 2,045,184 - EX28DRAFT_2031 0.67 -0.4 2,045,248 - EX28DRAFT_2031 0.73 +0.2 2,045,278 + EX28DRAFT_2031 0.75 -0.2 2,045,438 + EX28DRAFT_2031 0.89 -0.1 2,045,441 + EX28DRAFT_2031 0.90 +0.4 2,045,454 - -0.3 2,045,506 + +0.0 2,045,507 - +0.2 2,045,520 + +0.3 2,045,520 + +0.6 2,045,521 - +1.4 2,045,592 + +0.3 2,045,592 + +0.1 2,045,600 + +0.4 2,045,601 - -0.4 2,045,607 + +0.2 2,045,608 - +0.1 2,045,608 - +0.3 2,045,608 - +0.0 2,045,680 + +0.2 2,045,681 - -0.0 2,045,686 + +1.4 2,045,686 + +0.5 2,045,710 - +0.7 2,045,874 + EX28DRAFT_2032 0.12 +1.0 2,045,957 + EX28DRAFT_2032 0.15 +0.2 2,046,140 + EX28DRAFT_2032 0.23 -0.1 2,046,171 + EX28DRAFT_2032 0.25 -0.2 2,046,202 - EX28DRAFT_2032 0.26 +0.0 2,046,387 + EX28DRAFT_2032 0.34 +0.0 2,046,388 - EX28DRAFT_2032 0.34 +0.5
Or see this region's nucleotide sequence