Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1808 and EX28DRAFT_1809 are separated by 236 nucleotides EX28DRAFT_1809 and EX28DRAFT_1810 are separated by 45 nucleotides EX28DRAFT_1810 and EX28DRAFT_1811 are separated by 14 nucleotides
EX28DRAFT_1808: EX28DRAFT_1808 - Predicted signal transduction protein containing EAL and modified HD-GYP domains, at 1,822,718 to 1,823,947
_1808
EX28DRAFT_1809: EX28DRAFT_1809 - Methyl-accepting chemotaxis protein, at 1,824,184 to 1,826,115
_1809
EX28DRAFT_1810: EX28DRAFT_1810 - NAD-dependent protein deacetylases, SIR2 family, at 1,826,161 to 1,826,982
_1810
EX28DRAFT_1811: EX28DRAFT_1811 - Transcriptional regulator/sugar kinase, at 1,826,997 to 1,827,908
_1811
Position (kb)
1824
1825
1826
1827 Strain fitness (log2 ratio)
-2
-1
0
1 at 1823.207 kb on - strand, within EX28DRAFT_1808 at 1823.239 kb on + strand, within EX28DRAFT_1808 at 1823.363 kb on - strand, within EX28DRAFT_1808 at 1823.730 kb on - strand, within EX28DRAFT_1808 at 1823.755 kb on + strand, within EX28DRAFT_1808 at 1823.764 kb on + strand, within EX28DRAFT_1808 at 1823.764 kb on + strand, within EX28DRAFT_1808 at 1823.764 kb on + strand, within EX28DRAFT_1808 at 1823.764 kb on + strand, within EX28DRAFT_1808 at 1823.799 kb on - strand, within EX28DRAFT_1808 at 1823.799 kb on - strand, within EX28DRAFT_1808 at 1823.832 kb on + strand at 1823.971 kb on - strand at 1824.074 kb on + strand at 1824.375 kb on + strand at 1824.644 kb on + strand, within EX28DRAFT_1809 at 1824.685 kb on + strand, within EX28DRAFT_1809 at 1824.688 kb on + strand, within EX28DRAFT_1809 at 1824.688 kb on + strand, within EX28DRAFT_1809 at 1824.689 kb on - strand, within EX28DRAFT_1809 at 1824.712 kb on - strand, within EX28DRAFT_1809 at 1824.734 kb on - strand, within EX28DRAFT_1809 at 1824.735 kb on + strand, within EX28DRAFT_1809 at 1824.735 kb on + strand, within EX28DRAFT_1809 at 1824.736 kb on - strand, within EX28DRAFT_1809 at 1824.736 kb on - strand, within EX28DRAFT_1809 at 1824.740 kb on - strand, within EX28DRAFT_1809 at 1824.740 kb on - strand, within EX28DRAFT_1809 at 1824.745 kb on + strand, within EX28DRAFT_1809 at 1825.057 kb on - strand, within EX28DRAFT_1809 at 1825.155 kb on - strand, within EX28DRAFT_1809 at 1825.201 kb on - strand, within EX28DRAFT_1809 at 1825.368 kb on + strand, within EX28DRAFT_1809 at 1825.391 kb on + strand, within EX28DRAFT_1809 at 1825.515 kb on + strand, within EX28DRAFT_1809 at 1825.638 kb on + strand, within EX28DRAFT_1809 at 1826.007 kb on + strand at 1826.077 kb on - strand at 1826.113 kb on + strand at 1826.113 kb on + strand at 1826.117 kb on + strand at 1826.219 kb on + strand at 1826.278 kb on - strand, within EX28DRAFT_1810 at 1826.278 kb on - strand, within EX28DRAFT_1810 at 1826.352 kb on + strand, within EX28DRAFT_1810 at 1826.382 kb on - strand, within EX28DRAFT_1810 at 1826.466 kb on + strand, within EX28DRAFT_1810 at 1826.467 kb on - strand, within EX28DRAFT_1810 at 1826.467 kb on - strand, within EX28DRAFT_1810 at 1826.480 kb on - strand, within EX28DRAFT_1810 at 1826.754 kb on + strand, within EX28DRAFT_1810 at 1826.982 kb on + strand at 1826.983 kb on - strand at 1826.983 kb on - strand at 1826.993 kb on + strand at 1826.998 kb on + strand at 1827.090 kb on + strand, within EX28DRAFT_1811 at 1827.090 kb on + strand, within EX28DRAFT_1811
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,823,207 - EX28DRAFT_1808 0.40 +0.4 1,823,239 + EX28DRAFT_1808 0.42 +0.0 1,823,363 - EX28DRAFT_1808 0.52 +0.1 1,823,730 - EX28DRAFT_1808 0.82 +0.1 1,823,755 + EX28DRAFT_1808 0.84 -0.3 1,823,764 + EX28DRAFT_1808 0.85 -0.3 1,823,764 + EX28DRAFT_1808 0.85 -0.3 1,823,764 + EX28DRAFT_1808 0.85 +0.5 1,823,764 + EX28DRAFT_1808 0.85 +0.2 1,823,799 - EX28DRAFT_1808 0.88 +0.9 1,823,799 - EX28DRAFT_1808 0.88 -0.6 1,823,832 + -0.0 1,823,971 - -1.1 1,824,074 + +0.1 1,824,375 + -0.1 1,824,644 + EX28DRAFT_1809 0.24 +0.3 1,824,685 + EX28DRAFT_1809 0.26 +0.1 1,824,688 + EX28DRAFT_1809 0.26 -0.3 1,824,688 + EX28DRAFT_1809 0.26 -0.4 1,824,689 - EX28DRAFT_1809 0.26 -0.3 1,824,712 - EX28DRAFT_1809 0.27 -0.2 1,824,734 - EX28DRAFT_1809 0.28 -1.0 1,824,735 + EX28DRAFT_1809 0.29 +0.0 1,824,735 + EX28DRAFT_1809 0.29 +0.5 1,824,736 - EX28DRAFT_1809 0.29 +0.1 1,824,736 - EX28DRAFT_1809 0.29 -0.1 1,824,740 - EX28DRAFT_1809 0.29 +0.2 1,824,740 - EX28DRAFT_1809 0.29 +0.5 1,824,745 + EX28DRAFT_1809 0.29 +0.0 1,825,057 - EX28DRAFT_1809 0.45 -1.9 1,825,155 - EX28DRAFT_1809 0.50 -0.3 1,825,201 - EX28DRAFT_1809 0.53 -0.5 1,825,368 + EX28DRAFT_1809 0.61 +0.4 1,825,391 + EX28DRAFT_1809 0.62 -0.3 1,825,515 + EX28DRAFT_1809 0.69 -1.4 1,825,638 + EX28DRAFT_1809 0.75 -0.1 1,826,007 + -0.1 1,826,077 - -0.5 1,826,113 + -0.0 1,826,113 + +0.4 1,826,117 + -0.5 1,826,219 + -0.1 1,826,278 - EX28DRAFT_1810 0.14 +0.7 1,826,278 - EX28DRAFT_1810 0.14 +0.9 1,826,352 + EX28DRAFT_1810 0.23 -0.2 1,826,382 - EX28DRAFT_1810 0.27 +0.3 1,826,466 + EX28DRAFT_1810 0.37 +0.8 1,826,467 - EX28DRAFT_1810 0.37 +0.4 1,826,467 - EX28DRAFT_1810 0.37 -0.4 1,826,480 - EX28DRAFT_1810 0.39 +1.2 1,826,754 + EX28DRAFT_1810 0.72 +0.5 1,826,982 + -0.2 1,826,983 - -0.2 1,826,983 - -0.4 1,826,993 + +0.4 1,826,998 + -1.6 1,827,090 + EX28DRAFT_1811 0.10 +1.0 1,827,090 + EX28DRAFT_1811 0.10 +0.6
Or see this region's nucleotide sequence