Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1702 and EX28DRAFT_1703 are separated by 3 nucleotides EX28DRAFT_1703 and EX28DRAFT_1704 are separated by 233 nucleotides
EX28DRAFT_1702: EX28DRAFT_1702 - Beta-glucosidase-related glycosidases, at 1,714,827 to 1,717,202
_1702
EX28DRAFT_1703: EX28DRAFT_1703 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 1,717,206 to 1,718,606
_1703
EX28DRAFT_1704: EX28DRAFT_1704 - phosphoenolpyruvate synthase (EC 2.7.9.2), at 1,718,840 to 1,721,218
_1704
Position (kb)
1717
1718
1719 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1716.338 kb on + strand, within EX28DRAFT_1702 at 1716.516 kb on + strand, within EX28DRAFT_1702 at 1716.563 kb on - strand, within EX28DRAFT_1702 at 1716.697 kb on - strand, within EX28DRAFT_1702 at 1716.802 kb on + strand, within EX28DRAFT_1702 at 1717.146 kb on + strand at 1717.188 kb on - strand at 1717.189 kb on + strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.190 kb on - strand at 1717.193 kb on + strand at 1717.193 kb on + strand at 1717.193 kb on + strand at 1717.194 kb on - strand at 1717.194 kb on - strand at 1717.216 kb on - strand at 1717.314 kb on + strand at 1717.321 kb on + strand at 1717.321 kb on + strand at 1717.321 kb on + strand at 1717.322 kb on - strand at 1717.617 kb on - strand, within EX28DRAFT_1703 at 1717.628 kb on + strand, within EX28DRAFT_1703 at 1717.689 kb on - strand, within EX28DRAFT_1703 at 1717.701 kb on - strand, within EX28DRAFT_1703 at 1717.796 kb on + strand, within EX28DRAFT_1703 at 1717.797 kb on - strand, within EX28DRAFT_1703 at 1717.831 kb on + strand, within EX28DRAFT_1703 at 1717.832 kb on - strand, within EX28DRAFT_1703 at 1717.836 kb on + strand, within EX28DRAFT_1703 at 1717.836 kb on + strand, within EX28DRAFT_1703 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.840 kb on + strand, within EX28DRAFT_1703 at 1717.844 kb on - strand, within EX28DRAFT_1703 at 1717.890 kb on - strand, within EX28DRAFT_1703 at 1717.893 kb on - strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.907 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.964 kb on + strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1717.965 kb on - strand, within EX28DRAFT_1703 at 1718.053 kb on + strand, within EX28DRAFT_1703 at 1718.086 kb on - strand, within EX28DRAFT_1703 at 1718.216 kb on - strand, within EX28DRAFT_1703 at 1718.257 kb on + strand, within EX28DRAFT_1703 at 1718.263 kb on - strand, within EX28DRAFT_1703 at 1718.308 kb on + strand, within EX28DRAFT_1703 at 1718.308 kb on + strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.309 kb on - strand, within EX28DRAFT_1703 at 1718.316 kb on - strand, within EX28DRAFT_1703 at 1718.498 kb on - strand at 1718.569 kb on - strand at 1718.574 kb on - strand at 1718.589 kb on + strand at 1718.610 kb on + strand at 1718.610 kb on + strand at 1718.611 kb on - strand at 1718.692 kb on + strand at 1718.722 kb on - strand at 1718.841 kb on + strand at 1718.842 kb on - strand at 1718.842 kb on - strand at 1718.924 kb on - strand at 1718.924 kb on - strand at 1718.979 kb on + strand at 1718.980 kb on - strand at 1718.980 kb on - strand at 1719.190 kb on + strand, within EX28DRAFT_1704 at 1719.190 kb on + strand, within EX28DRAFT_1704 at 1719.460 kb on - strand, within EX28DRAFT_1704 at 1719.556 kb on - strand, within EX28DRAFT_1704 at 1719.556 kb on - strand, within EX28DRAFT_1704
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,716,338 + EX28DRAFT_1702 0.64 +2.1 1,716,516 + EX28DRAFT_1702 0.71 -0.1 1,716,563 - EX28DRAFT_1702 0.73 +0.5 1,716,697 - EX28DRAFT_1702 0.79 +0.0 1,716,802 + EX28DRAFT_1702 0.83 -0.5 1,717,146 + -0.4 1,717,188 - -0.1 1,717,189 + -0.4 1,717,190 - +1.3 1,717,190 - +0.3 1,717,190 - -0.1 1,717,190 - -0.3 1,717,193 + +0.4 1,717,193 + +0.4 1,717,193 + -2.6 1,717,194 - +0.8 1,717,194 - +0.6 1,717,216 - -0.4 1,717,314 + +0.4 1,717,321 + +0.1 1,717,321 + +0.4 1,717,321 + -0.1 1,717,322 - +0.2 1,717,617 - EX28DRAFT_1703 0.29 +0.1 1,717,628 + EX28DRAFT_1703 0.30 +0.8 1,717,689 - EX28DRAFT_1703 0.34 -0.8 1,717,701 - EX28DRAFT_1703 0.35 -0.6 1,717,796 + EX28DRAFT_1703 0.42 +0.5 1,717,797 - EX28DRAFT_1703 0.42 -0.9 1,717,831 + EX28DRAFT_1703 0.45 -0.2 1,717,832 - EX28DRAFT_1703 0.45 -0.5 1,717,836 + EX28DRAFT_1703 0.45 -0.0 1,717,836 + EX28DRAFT_1703 0.45 -0.1 1,717,840 + EX28DRAFT_1703 0.45 +0.3 1,717,840 + EX28DRAFT_1703 0.45 +0.1 1,717,844 - EX28DRAFT_1703 0.46 +0.2 1,717,890 - EX28DRAFT_1703 0.49 -0.1 1,717,893 - EX28DRAFT_1703 0.49 -0.1 1,717,907 + EX28DRAFT_1703 0.50 +0.7 1,717,907 + EX28DRAFT_1703 0.50 +0.2 1,717,907 + EX28DRAFT_1703 0.50 +0.5 1,717,964 + EX28DRAFT_1703 0.54 -1.1 1,717,964 + EX28DRAFT_1703 0.54 -0.7 1,717,965 - EX28DRAFT_1703 0.54 -0.0 1,717,965 - EX28DRAFT_1703 0.54 +0.5 1,718,053 + EX28DRAFT_1703 0.60 -0.1 1,718,086 - EX28DRAFT_1703 0.63 -0.1 1,718,216 - EX28DRAFT_1703 0.72 -2.1 1,718,257 + EX28DRAFT_1703 0.75 +0.1 1,718,263 - EX28DRAFT_1703 0.75 -0.8 1,718,308 + EX28DRAFT_1703 0.79 -0.1 1,718,308 + EX28DRAFT_1703 0.79 -0.4 1,718,309 - EX28DRAFT_1703 0.79 +0.2 1,718,309 - EX28DRAFT_1703 0.79 -0.7 1,718,309 - EX28DRAFT_1703 0.79 +0.3 1,718,316 - EX28DRAFT_1703 0.79 -0.0 1,718,498 - +0.3 1,718,569 - -0.1 1,718,574 - +0.4 1,718,589 + -0.2 1,718,610 + +0.2 1,718,610 + +0.3 1,718,611 - -1.2 1,718,692 + -0.3 1,718,722 - +0.4 1,718,841 + +0.0 1,718,842 - +0.5 1,718,842 - +0.1 1,718,924 - +0.5 1,718,924 - +0.3 1,718,979 + -0.1 1,718,980 - -0.6 1,718,980 - -0.0 1,719,190 + EX28DRAFT_1704 0.15 -0.3 1,719,190 + EX28DRAFT_1704 0.15 -0.2 1,719,460 - EX28DRAFT_1704 0.26 +0.1 1,719,556 - EX28DRAFT_1704 0.30 +0.5 1,719,556 - EX28DRAFT_1704 0.30 +0.1
Or see this region's nucleotide sequence