Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1660 and EX28DRAFT_1661 are separated by 36 nucleotides EX28DRAFT_1661 and EX28DRAFT_1662 are separated by 3 nucleotides EX28DRAFT_1662 and EX28DRAFT_1663 are separated by 4 nucleotides EX28DRAFT_1663 and EX28DRAFT_1664 are separated by 118 nucleotides
EX28DRAFT_1660: EX28DRAFT_1660 - putative efflux protein, MATE family, at 1,676,751 to 1,678,112
_1660
EX28DRAFT_1661: EX28DRAFT_1661 - hypothetical protein, at 1,678,149 to 1,678,262
_1661
EX28DRAFT_1662: EX28DRAFT_1662 - tRNA, at 1,678,266 to 1,678,342
_1662
EX28DRAFT_1663: EX28DRAFT_1663 - tRNA, at 1,678,347 to 1,678,423
_1663
EX28DRAFT_1664: EX28DRAFT_1664 - Uncharacterized protein conserved in bacteria, at 1,678,542 to 1,680,137
_1664
Position (kb)
1678
1679 Strain fitness (log2 ratio)
-1
0
1 at 1677.460 kb on + strand, within EX28DRAFT_1660 at 1677.460 kb on + strand, within EX28DRAFT_1660 at 1677.461 kb on - strand, within EX28DRAFT_1660 at 1677.868 kb on + strand, within EX28DRAFT_1660 at 1677.881 kb on + strand, within EX28DRAFT_1660 at 1677.906 kb on - strand, within EX28DRAFT_1660 at 1677.949 kb on - strand, within EX28DRAFT_1660 at 1678.041 kb on - strand at 1678.482 kb on - strand at 1678.584 kb on + strand at 1678.585 kb on - strand at 1678.587 kb on - strand at 1678.671 kb on + strand at 1678.671 kb on + strand at 1678.672 kb on - strand at 1678.685 kb on + strand at 1678.746 kb on + strand, within EX28DRAFT_1664 at 1678.746 kb on + strand, within EX28DRAFT_1664 at 1678.883 kb on - strand, within EX28DRAFT_1664 at 1679.201 kb on + strand, within EX28DRAFT_1664 at 1679.202 kb on - strand, within EX28DRAFT_1664
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,677,460 + EX28DRAFT_1660 0.52 +0.1 1,677,460 + EX28DRAFT_1660 0.52 -0.4 1,677,461 - EX28DRAFT_1660 0.52 +0.8 1,677,868 + EX28DRAFT_1660 0.82 +0.6 1,677,881 + EX28DRAFT_1660 0.83 +0.0 1,677,906 - EX28DRAFT_1660 0.85 +0.1 1,677,949 - EX28DRAFT_1660 0.88 +0.3 1,678,041 - +0.2 1,678,482 - -1.0 1,678,584 + +1.2 1,678,585 - -1.3 1,678,587 - -0.9 1,678,671 + +0.4 1,678,671 + -0.7 1,678,672 - +0.3 1,678,685 + +0.4 1,678,746 + EX28DRAFT_1664 0.13 +0.2 1,678,746 + EX28DRAFT_1664 0.13 -0.9 1,678,883 - EX28DRAFT_1664 0.21 -0.2 1,679,201 + EX28DRAFT_1664 0.41 -0.8 1,679,202 - EX28DRAFT_1664 0.41 -0.5
Or see this region's nucleotide sequence