Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1652 and EX28DRAFT_1653 are separated by 122 nucleotides EX28DRAFT_1653 and EX28DRAFT_1654 are separated by 38 nucleotides
EX28DRAFT_1652: EX28DRAFT_1652 - Cell wall-associated hydrolases (invasion-associated proteins), at 1,667,891 to 1,668,664
_1652
EX28DRAFT_1653: EX28DRAFT_1653 - Superoxide dismutase, at 1,668,787 to 1,669,368
_1653
EX28DRAFT_1654: EX28DRAFT_1654 - Arabinose efflux permease, at 1,669,407 to 1,670,573
_1654
Position (kb)
1668
1669
1670 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1667.796 kb on - strand at 1667.798 kb on + strand at 1667.814 kb on + strand at 1667.821 kb on + strand at 1667.822 kb on - strand at 1667.822 kb on - strand at 1667.839 kb on + strand at 1667.839 kb on + strand at 1667.839 kb on + strand at 1667.931 kb on + strand at 1667.938 kb on + strand at 1668.247 kb on + strand, within EX28DRAFT_1652 at 1668.314 kb on + strand, within EX28DRAFT_1652 at 1668.371 kb on + strand, within EX28DRAFT_1652 at 1668.371 kb on + strand, within EX28DRAFT_1652 at 1668.378 kb on - strand, within EX28DRAFT_1652 at 1668.379 kb on + strand, within EX28DRAFT_1652 at 1668.425 kb on + strand, within EX28DRAFT_1652 at 1668.425 kb on + strand, within EX28DRAFT_1652 at 1668.530 kb on + strand, within EX28DRAFT_1652 at 1668.531 kb on - strand, within EX28DRAFT_1652 at 1668.606 kb on - strand at 1668.606 kb on - strand at 1668.606 kb on - strand at 1668.768 kb on + strand at 1668.769 kb on - strand at 1668.773 kb on + strand at 1668.774 kb on - strand at 1668.774 kb on - strand at 1668.815 kb on - strand at 1668.862 kb on + strand, within EX28DRAFT_1653 at 1668.889 kb on + strand, within EX28DRAFT_1653 at 1668.890 kb on - strand, within EX28DRAFT_1653 at 1668.907 kb on - strand, within EX28DRAFT_1653 at 1668.982 kb on - strand, within EX28DRAFT_1653 at 1669.168 kb on - strand, within EX28DRAFT_1653 at 1669.191 kb on + strand, within EX28DRAFT_1653 at 1669.216 kb on - strand, within EX28DRAFT_1653 at 1669.274 kb on - strand, within EX28DRAFT_1653 at 1669.276 kb on + strand, within EX28DRAFT_1653 at 1669.276 kb on + strand, within EX28DRAFT_1653 at 1669.276 kb on + strand, within EX28DRAFT_1653 at 1669.276 kb on + strand, within EX28DRAFT_1653 at 1669.277 kb on - strand, within EX28DRAFT_1653 at 1669.439 kb on + strand at 1669.811 kb on - strand, within EX28DRAFT_1654 at 1669.880 kb on + strand, within EX28DRAFT_1654 at 1669.884 kb on - strand, within EX28DRAFT_1654 at 1669.906 kb on + strand, within EX28DRAFT_1654 at 1669.907 kb on - strand, within EX28DRAFT_1654 at 1669.907 kb on - strand, within EX28DRAFT_1654 at 1669.913 kb on - strand, within EX28DRAFT_1654 at 1669.913 kb on - strand, within EX28DRAFT_1654 at 1669.913 kb on - strand, within EX28DRAFT_1654 at 1670.352 kb on + strand, within EX28DRAFT_1654
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,667,796 - -0.7 1,667,798 + -0.1 1,667,814 + -0.3 1,667,821 + -0.2 1,667,822 - +0.2 1,667,822 - -0.1 1,667,839 + -0.1 1,667,839 + -0.0 1,667,839 + +0.5 1,667,931 + +0.6 1,667,938 + +0.4 1,668,247 + EX28DRAFT_1652 0.46 -0.3 1,668,314 + EX28DRAFT_1652 0.55 -4.8 1,668,371 + EX28DRAFT_1652 0.62 +1.3 1,668,371 + EX28DRAFT_1652 0.62 +0.3 1,668,378 - EX28DRAFT_1652 0.63 -0.3 1,668,379 + EX28DRAFT_1652 0.63 -0.7 1,668,425 + EX28DRAFT_1652 0.69 -0.1 1,668,425 + EX28DRAFT_1652 0.69 +0.1 1,668,530 + EX28DRAFT_1652 0.83 +0.1 1,668,531 - EX28DRAFT_1652 0.83 -1.2 1,668,606 - -0.2 1,668,606 - -0.2 1,668,606 - +0.1 1,668,768 + +0.2 1,668,769 - -0.2 1,668,773 + +0.7 1,668,774 - +0.7 1,668,774 - -0.3 1,668,815 - -0.4 1,668,862 + EX28DRAFT_1653 0.13 +0.3 1,668,889 + EX28DRAFT_1653 0.18 -0.3 1,668,890 - EX28DRAFT_1653 0.18 -0.3 1,668,907 - EX28DRAFT_1653 0.21 +0.5 1,668,982 - EX28DRAFT_1653 0.34 -0.3 1,669,168 - EX28DRAFT_1653 0.65 -0.1 1,669,191 + EX28DRAFT_1653 0.69 +0.3 1,669,216 - EX28DRAFT_1653 0.74 -0.6 1,669,274 - EX28DRAFT_1653 0.84 -0.1 1,669,276 + EX28DRAFT_1653 0.84 -1.0 1,669,276 + EX28DRAFT_1653 0.84 +0.0 1,669,276 + EX28DRAFT_1653 0.84 -0.3 1,669,276 + EX28DRAFT_1653 0.84 -0.4 1,669,277 - EX28DRAFT_1653 0.84 -0.5 1,669,439 + +0.2 1,669,811 - EX28DRAFT_1654 0.35 -0.2 1,669,880 + EX28DRAFT_1654 0.41 -0.1 1,669,884 - EX28DRAFT_1654 0.41 -0.5 1,669,906 + EX28DRAFT_1654 0.43 -0.7 1,669,907 - EX28DRAFT_1654 0.43 +0.5 1,669,907 - EX28DRAFT_1654 0.43 -1.5 1,669,913 - EX28DRAFT_1654 0.43 +0.3 1,669,913 - EX28DRAFT_1654 0.43 +0.4 1,669,913 - EX28DRAFT_1654 0.43 +0.9 1,670,352 + EX28DRAFT_1654 0.81 -0.1
Or see this region's nucleotide sequence