Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1639

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1638 and EX28DRAFT_1639 are separated by 35 nucleotidesEX28DRAFT_1639 and EX28DRAFT_1640 are separated by 192 nucleotidesEX28DRAFT_1640 and EX28DRAFT_1641 overlap by 34 nucleotides EX28DRAFT_1638: EX28DRAFT_1638 - diguanylate cyclase (GGDEF) domain, at 1,655,421 to 1,656,782 _1638 EX28DRAFT_1639: EX28DRAFT_1639 - Transcriptional regulators, at 1,656,818 to 1,657,252 _1639 EX28DRAFT_1640: EX28DRAFT_1640 - Protein of unknown function (DUF1656), at 1,657,445 to 1,657,681 _1640 EX28DRAFT_1641: EX28DRAFT_1641 - RND family efflux transporter, MFP subunit, at 1,657,648 to 1,658,544 _1641 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -1 0 1at 1655.826 kb on + strand, within EX28DRAFT_1638at 1655.925 kb on + strand, within EX28DRAFT_1638at 1656.008 kb on + strand, within EX28DRAFT_1638at 1656.060 kb on - strand, within EX28DRAFT_1638at 1656.079 kb on + strand, within EX28DRAFT_1638at 1656.080 kb on - strand, within EX28DRAFT_1638at 1656.140 kb on - strand, within EX28DRAFT_1638at 1656.161 kb on + strand, within EX28DRAFT_1638at 1656.315 kb on + strand, within EX28DRAFT_1638at 1656.316 kb on - strand, within EX28DRAFT_1638at 1656.360 kb on - strand, within EX28DRAFT_1638at 1656.420 kb on - strand, within EX28DRAFT_1638at 1656.432 kb on + strand, within EX28DRAFT_1638at 1656.432 kb on + strand, within EX28DRAFT_1638at 1656.433 kb on - strand, within EX28DRAFT_1638at 1656.433 kb on - strand, within EX28DRAFT_1638at 1656.592 kb on + strand, within EX28DRAFT_1638at 1656.598 kb on + strand, within EX28DRAFT_1638at 1656.598 kb on + strand, within EX28DRAFT_1638at 1656.599 kb on - strand, within EX28DRAFT_1638at 1656.735 kb on + strandat 1656.735 kb on + strandat 1656.736 kb on - strandat 1656.736 kb on - strandat 1656.780 kb on + strandat 1656.834 kb on - strandat 1656.958 kb on + strand, within EX28DRAFT_1639at 1657.215 kb on - strandat 1657.238 kb on + strandat 1657.302 kb on + strandat 1657.356 kb on + strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.357 kb on - strandat 1657.369 kb on + strandat 1657.369 kb on + strandat 1657.369 kb on + strandat 1657.370 kb on - strandat 1657.370 kb on - strandat 1657.370 kb on - strandat 1657.370 kb on - strandat 1657.395 kb on - strandat 1657.395 kb on - strandat 1657.397 kb on + strandat 1657.398 kb on - strandat 1657.509 kb on - strand, within EX28DRAFT_1640at 1657.526 kb on - strand, within EX28DRAFT_1640at 1657.589 kb on + strand, within EX28DRAFT_1640at 1657.590 kb on - strand, within EX28DRAFT_1640at 1657.590 kb on - strand, within EX28DRAFT_1640at 1657.770 kb on + strand, within EX28DRAFT_1641at 1657.770 kb on + strand, within EX28DRAFT_1641at 1658.026 kb on + strand, within EX28DRAFT_1641at 1658.027 kb on - strand, within EX28DRAFT_1641at 1658.045 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.197 kb on + strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.198 kb on - strand, within EX28DRAFT_1641at 1658.248 kb on + strand, within EX28DRAFT_1641

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,655,826 + EX28DRAFT_1638 0.30 -0.4
1,655,925 + EX28DRAFT_1638 0.37 -0.8
1,656,008 + EX28DRAFT_1638 0.43 +0.8
1,656,060 - EX28DRAFT_1638 0.47 -0.7
1,656,079 + EX28DRAFT_1638 0.48 -0.1
1,656,080 - EX28DRAFT_1638 0.48 -0.0
1,656,140 - EX28DRAFT_1638 0.53 -0.3
1,656,161 + EX28DRAFT_1638 0.54 -0.6
1,656,315 + EX28DRAFT_1638 0.66 +0.5
1,656,316 - EX28DRAFT_1638 0.66 +0.9
1,656,360 - EX28DRAFT_1638 0.69 +0.1
1,656,420 - EX28DRAFT_1638 0.73 +0.1
1,656,432 + EX28DRAFT_1638 0.74 -0.1
1,656,432 + EX28DRAFT_1638 0.74 +0.1
1,656,433 - EX28DRAFT_1638 0.74 +0.1
1,656,433 - EX28DRAFT_1638 0.74 -0.3
1,656,592 + EX28DRAFT_1638 0.86 +0.6
1,656,598 + EX28DRAFT_1638 0.86 -0.5
1,656,598 + EX28DRAFT_1638 0.86 -0.6
1,656,599 - EX28DRAFT_1638 0.86 +0.1
1,656,735 + +0.2
1,656,735 + -0.3
1,656,736 - +0.0
1,656,736 - +0.3
1,656,780 + +0.2
1,656,834 - +0.6
1,656,958 + EX28DRAFT_1639 0.32 +0.6
1,657,215 - +1.6
1,657,238 + +1.3
1,657,302 + +1.1
1,657,356 + +0.1
1,657,357 - -0.4
1,657,357 - +0.1
1,657,357 - +0.7
1,657,369 + +0.1
1,657,369 + +0.3
1,657,369 + -0.1
1,657,370 - +0.5
1,657,370 - -0.3
1,657,370 - -0.3
1,657,370 - -0.5
1,657,395 - -0.1
1,657,395 - -0.4
1,657,397 + +1.5
1,657,398 - +0.1
1,657,509 - EX28DRAFT_1640 0.27 -0.2
1,657,526 - EX28DRAFT_1640 0.34 +1.5
1,657,589 + EX28DRAFT_1640 0.61 -0.1
1,657,590 - EX28DRAFT_1640 0.61 +0.9
1,657,590 - EX28DRAFT_1640 0.61 +0.4
1,657,770 + EX28DRAFT_1641 0.14 +0.5
1,657,770 + EX28DRAFT_1641 0.14 -1.4
1,658,026 + EX28DRAFT_1641 0.42 +0.6
1,658,027 - EX28DRAFT_1641 0.42 +0.8
1,658,045 + EX28DRAFT_1641 0.44 -0.4
1,658,197 + EX28DRAFT_1641 0.61 +1.0
1,658,197 + EX28DRAFT_1641 0.61 +0.1
1,658,197 + EX28DRAFT_1641 0.61 -0.7
1,658,198 - EX28DRAFT_1641 0.61 +0.1
1,658,198 - EX28DRAFT_1641 0.61 +0.7
1,658,198 - EX28DRAFT_1641 0.61 -1.0
1,658,198 - EX28DRAFT_1641 0.61 +0.7
1,658,248 + EX28DRAFT_1641 0.67 -0.4

Or see this region's nucleotide sequence