Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1607 and EX28DRAFT_1608 are separated by 0 nucleotides EX28DRAFT_1608 and EX28DRAFT_1609 are separated by 139 nucleotides
EX28DRAFT_1607: EX28DRAFT_1607 - DNA replication terminus site binding protein, at 1,623,114 to 1,624,043
_1607
EX28DRAFT_1608: EX28DRAFT_1608 - fumarase, class II (EC 4.2.1.2), at 1,624,044 to 1,625,438
_1608
EX28DRAFT_1609: EX28DRAFT_1609 - hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region, at 1,625,578 to 1,627,224
_1609
Position (kb)
1624
1625
1626 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1623.078 kb on + strand at 1623.078 kb on + strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.079 kb on - strand at 1623.080 kb on + strand at 1623.081 kb on - strand at 1623.081 kb on - strand at 1623.081 kb on - strand at 1623.113 kb on + strand at 1623.123 kb on + strand at 1623.163 kb on + strand at 1623.163 kb on + strand at 1623.163 kb on + strand at 1623.248 kb on + strand, within EX28DRAFT_1607 at 1623.348 kb on - strand, within EX28DRAFT_1607 at 1623.348 kb on - strand, within EX28DRAFT_1607 at 1623.378 kb on - strand, within EX28DRAFT_1607 at 1623.595 kb on + strand, within EX28DRAFT_1607 at 1623.647 kb on + strand, within EX28DRAFT_1607 at 1623.648 kb on - strand, within EX28DRAFT_1607 at 1623.760 kb on - strand, within EX28DRAFT_1607 at 1623.828 kb on - strand, within EX28DRAFT_1607 at 1623.870 kb on + strand, within EX28DRAFT_1607 at 1623.870 kb on + strand, within EX28DRAFT_1607 at 1623.871 kb on - strand, within EX28DRAFT_1607 at 1623.900 kb on + strand, within EX28DRAFT_1607 at 1623.901 kb on - strand, within EX28DRAFT_1607 at 1623.952 kb on - strand at 1623.952 kb on - strand at 1623.952 kb on - strand at 1624.001 kb on - strand at 1624.151 kb on + strand at 1624.247 kb on + strand, within EX28DRAFT_1608 at 1624.789 kb on + strand, within EX28DRAFT_1608 at 1624.796 kb on + strand, within EX28DRAFT_1608 at 1624.796 kb on + strand, within EX28DRAFT_1608 at 1624.797 kb on - strand, within EX28DRAFT_1608 at 1624.808 kb on + strand, within EX28DRAFT_1608 at 1624.809 kb on - strand, within EX28DRAFT_1608 at 1625.376 kb on + strand at 1625.376 kb on + strand at 1625.376 kb on + strand at 1625.488 kb on - strand at 1625.491 kb on + strand at 1625.491 kb on + strand at 1625.491 kb on + strand at 1625.491 kb on + strand at 1625.492 kb on - strand at 1625.492 kb on - strand at 1625.492 kb on - strand at 1625.579 kb on + strand at 1625.579 kb on + strand at 1625.580 kb on - strand at 1625.734 kb on - strand at 1625.967 kb on - strand, within EX28DRAFT_1609 at 1626.191 kb on + strand, within EX28DRAFT_1609 at 1626.348 kb on - strand, within EX28DRAFT_1609 at 1626.415 kb on + strand, within EX28DRAFT_1609 at 1626.415 kb on + strand, within EX28DRAFT_1609
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,623,078 + -0.6 1,623,078 + +0.3 1,623,079 - -0.5 1,623,079 - +1.5 1,623,079 - +0.4 1,623,079 - -0.1 1,623,079 - -0.0 1,623,079 - +0.3 1,623,079 - -0.0 1,623,080 + +0.1 1,623,081 - -0.1 1,623,081 - +0.1 1,623,081 - +0.1 1,623,113 + +0.5 1,623,123 + -0.7 1,623,163 + +0.4 1,623,163 + +0.8 1,623,163 + -0.5 1,623,248 + EX28DRAFT_1607 0.14 +0.5 1,623,348 - EX28DRAFT_1607 0.25 +0.6 1,623,348 - EX28DRAFT_1607 0.25 +0.2 1,623,378 - EX28DRAFT_1607 0.28 +0.4 1,623,595 + EX28DRAFT_1607 0.52 +0.4 1,623,647 + EX28DRAFT_1607 0.57 +1.0 1,623,648 - EX28DRAFT_1607 0.57 +0.1 1,623,760 - EX28DRAFT_1607 0.69 -0.3 1,623,828 - EX28DRAFT_1607 0.77 -0.7 1,623,870 + EX28DRAFT_1607 0.81 +0.5 1,623,870 + EX28DRAFT_1607 0.81 +1.0 1,623,871 - EX28DRAFT_1607 0.81 -0.0 1,623,900 + EX28DRAFT_1607 0.85 +0.4 1,623,901 - EX28DRAFT_1607 0.85 +0.2 1,623,952 - -0.8 1,623,952 - -0.8 1,623,952 - -0.1 1,624,001 - -0.6 1,624,151 + +1.4 1,624,247 + EX28DRAFT_1608 0.15 +2.2 1,624,789 + EX28DRAFT_1608 0.53 +2.1 1,624,796 + EX28DRAFT_1608 0.54 +2.3 1,624,796 + EX28DRAFT_1608 0.54 +2.0 1,624,797 - EX28DRAFT_1608 0.54 +0.9 1,624,808 + EX28DRAFT_1608 0.55 +2.4 1,624,809 - EX28DRAFT_1608 0.55 +2.3 1,625,376 + +1.7 1,625,376 + +1.4 1,625,376 + +2.0 1,625,488 - -0.3 1,625,491 + +0.6 1,625,491 + +0.3 1,625,491 + +0.4 1,625,491 + +0.8 1,625,492 - +1.9 1,625,492 - -1.8 1,625,492 - +0.5 1,625,579 + +0.1 1,625,579 + -0.1 1,625,580 - -0.3 1,625,734 - +0.0 1,625,967 - EX28DRAFT_1609 0.24 +0.0 1,626,191 + EX28DRAFT_1609 0.37 +0.1 1,626,348 - EX28DRAFT_1609 0.47 -0.4 1,626,415 + EX28DRAFT_1609 0.51 -0.6 1,626,415 + EX28DRAFT_1609 0.51 -1.1
Or see this region's nucleotide sequence