Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1543 and EX28DRAFT_1544 are separated by 25 nucleotides EX28DRAFT_1544 and EX28DRAFT_1545 are separated by 535 nucleotides
EX28DRAFT_1543: EX28DRAFT_1543 - NAD/NADP transhydrogenase beta subunit, at 1,557,628 to 1,559,001
_1543
EX28DRAFT_1544: EX28DRAFT_1544 - NAD(P) transhydrogenase, alpha subunit, at 1,559,027 to 1,560,556
_1544
EX28DRAFT_1545: EX28DRAFT_1545 - Protein of unknown function (DUF1471), at 1,561,092 to 1,562,036
_1545
Position (kb)
1559
1560
1561 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1558.236 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.247 kb on + strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.248 kb on - strand, within EX28DRAFT_1543 at 1558.314 kb on + strand, within EX28DRAFT_1543 at 1558.347 kb on - strand, within EX28DRAFT_1543 at 1558.499 kb on - strand, within EX28DRAFT_1543 at 1558.633 kb on - strand, within EX28DRAFT_1543 at 1558.694 kb on + strand, within EX28DRAFT_1543 at 1558.700 kb on + strand, within EX28DRAFT_1543 at 1558.701 kb on - strand, within EX28DRAFT_1543 at 1558.701 kb on - strand, within EX28DRAFT_1543 at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.915 kb on - strand at 1558.966 kb on - strand at 1558.988 kb on + strand at 1558.988 kb on + strand at 1558.988 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.016 kb on + strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.017 kb on - strand at 1559.188 kb on + strand, within EX28DRAFT_1544 at 1559.209 kb on + strand, within EX28DRAFT_1544 at 1559.241 kb on + strand, within EX28DRAFT_1544 at 1559.242 kb on - strand, within EX28DRAFT_1544 at 1559.242 kb on - strand, within EX28DRAFT_1544 at 1559.244 kb on + strand, within EX28DRAFT_1544 at 1559.330 kb on - strand, within EX28DRAFT_1544 at 1559.440 kb on + strand, within EX28DRAFT_1544 at 1559.534 kb on - strand, within EX28DRAFT_1544 at 1559.855 kb on - strand, within EX28DRAFT_1544 at 1559.957 kb on + strand, within EX28DRAFT_1544 at 1560.168 kb on - strand, within EX28DRAFT_1544 at 1560.254 kb on + strand, within EX28DRAFT_1544 at 1560.254 kb on + strand, within EX28DRAFT_1544 at 1560.475 kb on + strand at 1560.551 kb on - strand at 1560.556 kb on + strand at 1560.557 kb on - strand at 1560.684 kb on + strand at 1560.684 kb on + strand at 1560.782 kb on - strand at 1560.782 kb on - strand at 1560.786 kb on - strand at 1560.846 kb on - strand at 1560.857 kb on + strand at 1560.946 kb on + strand at 1560.974 kb on - strand at 1561.044 kb on + strand at 1561.060 kb on - strand at 1561.100 kb on + strand at 1561.101 kb on - strand at 1561.208 kb on + strand, within EX28DRAFT_1545 at 1561.208 kb on + strand, within EX28DRAFT_1545 at 1561.209 kb on - strand, within EX28DRAFT_1545 at 1561.229 kb on + strand, within EX28DRAFT_1545 at 1561.229 kb on + strand, within EX28DRAFT_1545 at 1561.230 kb on - strand, within EX28DRAFT_1545 at 1561.230 kb on - strand, within EX28DRAFT_1545 at 1561.230 kb on - strand, within EX28DRAFT_1545 at 1561.275 kb on - strand, within EX28DRAFT_1545 at 1561.297 kb on - strand, within EX28DRAFT_1545 at 1561.479 kb on + strand, within EX28DRAFT_1545
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,558,236 + EX28DRAFT_1543 0.44 +0.5 1,558,247 + EX28DRAFT_1543 0.45 -0.3 1,558,247 + EX28DRAFT_1543 0.45 -0.1 1,558,247 + EX28DRAFT_1543 0.45 +0.2 1,558,248 - EX28DRAFT_1543 0.45 -0.4 1,558,248 - EX28DRAFT_1543 0.45 -1.9 1,558,248 - EX28DRAFT_1543 0.45 +1.5 1,558,314 + EX28DRAFT_1543 0.50 -0.2 1,558,347 - EX28DRAFT_1543 0.52 -0.4 1,558,499 - EX28DRAFT_1543 0.63 -0.2 1,558,633 - EX28DRAFT_1543 0.73 -1.3 1,558,694 + EX28DRAFT_1543 0.78 -0.3 1,558,700 + EX28DRAFT_1543 0.78 -0.5 1,558,701 - EX28DRAFT_1543 0.78 +0.2 1,558,701 - EX28DRAFT_1543 0.78 +0.2 1,558,915 - -0.3 1,558,915 - +0.3 1,558,915 - -0.2 1,558,915 - -0.2 1,558,966 - -0.4 1,558,988 + +0.2 1,558,988 + -0.4 1,558,988 + -0.3 1,559,016 + +0.1 1,559,016 + +0.1 1,559,016 + +0.2 1,559,016 + +0.2 1,559,017 - -0.1 1,559,017 - -0.3 1,559,017 - +0.9 1,559,017 - -0.1 1,559,017 - -0.4 1,559,017 - -0.3 1,559,017 - +0.5 1,559,188 + EX28DRAFT_1544 0.11 +0.5 1,559,209 + EX28DRAFT_1544 0.12 -0.0 1,559,241 + EX28DRAFT_1544 0.14 -1.7 1,559,242 - EX28DRAFT_1544 0.14 -0.1 1,559,242 - EX28DRAFT_1544 0.14 +1.5 1,559,244 + EX28DRAFT_1544 0.14 -0.7 1,559,330 - EX28DRAFT_1544 0.20 -1.1 1,559,440 + EX28DRAFT_1544 0.27 +0.6 1,559,534 - EX28DRAFT_1544 0.33 +0.2 1,559,855 - EX28DRAFT_1544 0.54 -0.4 1,559,957 + EX28DRAFT_1544 0.61 -0.7 1,560,168 - EX28DRAFT_1544 0.75 +0.3 1,560,254 + EX28DRAFT_1544 0.80 +0.2 1,560,254 + EX28DRAFT_1544 0.80 -0.8 1,560,475 + +0.1 1,560,551 - +0.5 1,560,556 + -0.8 1,560,557 - -0.2 1,560,684 + +0.1 1,560,684 + +0.3 1,560,782 - +0.5 1,560,782 - +0.5 1,560,786 - +1.3 1,560,846 - -1.4 1,560,857 + +2.0 1,560,946 + +0.5 1,560,974 - -0.1 1,561,044 + +2.7 1,561,060 - +0.1 1,561,100 + -0.8 1,561,101 - -0.4 1,561,208 + EX28DRAFT_1545 0.12 +0.5 1,561,208 + EX28DRAFT_1545 0.12 +0.2 1,561,209 - EX28DRAFT_1545 0.12 +0.2 1,561,229 + EX28DRAFT_1545 0.14 +0.4 1,561,229 + EX28DRAFT_1545 0.14 -0.9 1,561,230 - EX28DRAFT_1545 0.15 -0.6 1,561,230 - EX28DRAFT_1545 0.15 -0.3 1,561,230 - EX28DRAFT_1545 0.15 +0.8 1,561,275 - EX28DRAFT_1545 0.19 -0.3 1,561,297 - EX28DRAFT_1545 0.22 +0.4 1,561,479 + EX28DRAFT_1545 0.41 -0.6
Or see this region's nucleotide sequence