Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1355 and EX28DRAFT_1356 are separated by 75 nucleotides EX28DRAFT_1356 and EX28DRAFT_1357 are separated by 70 nucleotides
EX28DRAFT_1355: EX28DRAFT_1355 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,370,620 to 1,371,999
_1355
EX28DRAFT_1356: EX28DRAFT_1356 - Predicted O-methyltransferase, at 1,372,075 to 1,372,734
_1356
EX28DRAFT_1357: EX28DRAFT_1357 - RNA helicase HrpA, at 1,372,805 to 1,376,707
_1357
Position (kb)
1372
1373 Strain fitness (log2 ratio)
-2
-1
0
1 at 1371.208 kb on - strand, within EX28DRAFT_1355 at 1371.257 kb on + strand, within EX28DRAFT_1355 at 1371.258 kb on - strand, within EX28DRAFT_1355 at 1371.624 kb on + strand, within EX28DRAFT_1355 at 1371.672 kb on + strand, within EX28DRAFT_1355 at 1371.672 kb on + strand, within EX28DRAFT_1355 at 1371.704 kb on - strand, within EX28DRAFT_1355 at 1371.709 kb on + strand, within EX28DRAFT_1355 at 1371.765 kb on + strand, within EX28DRAFT_1355 at 1371.869 kb on - strand at 1371.964 kb on + strand at 1371.965 kb on - strand at 1371.965 kb on - strand at 1371.965 kb on - strand at 1372.101 kb on + strand at 1372.101 kb on + strand at 1372.101 kb on + strand at 1372.102 kb on - strand at 1372.105 kb on + strand at 1372.105 kb on + strand at 1372.106 kb on - strand at 1372.267 kb on - strand, within EX28DRAFT_1356 at 1372.281 kb on + strand, within EX28DRAFT_1356 at 1372.282 kb on - strand, within EX28DRAFT_1356 at 1372.838 kb on - strand at 1372.963 kb on + strand at 1372.963 kb on + strand at 1373.128 kb on - strand at 1373.128 kb on - strand at 1373.183 kb on - strand at 1373.252 kb on + strand, within EX28DRAFT_1357 at 1373.457 kb on + strand, within EX28DRAFT_1357 at 1373.601 kb on + strand, within EX28DRAFT_1357 at 1373.602 kb on - strand, within EX28DRAFT_1357 at 1373.602 kb on - strand, within EX28DRAFT_1357 at 1373.602 kb on - strand, within EX28DRAFT_1357 at 1373.654 kb on - strand, within EX28DRAFT_1357
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,371,208 - EX28DRAFT_1355 0.43 +0.1 1,371,257 + EX28DRAFT_1355 0.46 +0.1 1,371,258 - EX28DRAFT_1355 0.46 -0.7 1,371,624 + EX28DRAFT_1355 0.73 +0.0 1,371,672 + EX28DRAFT_1355 0.76 -0.7 1,371,672 + EX28DRAFT_1355 0.76 +0.4 1,371,704 - EX28DRAFT_1355 0.79 +0.7 1,371,709 + EX28DRAFT_1355 0.79 -0.4 1,371,765 + EX28DRAFT_1355 0.83 +0.2 1,371,869 - +0.0 1,371,964 + -0.8 1,371,965 - -0.4 1,371,965 - +0.3 1,371,965 - +0.1 1,372,101 + +0.1 1,372,101 + +0.1 1,372,101 + +0.2 1,372,102 - -0.1 1,372,105 + +0.8 1,372,105 + -0.6 1,372,106 - +0.7 1,372,267 - EX28DRAFT_1356 0.29 +0.2 1,372,281 + EX28DRAFT_1356 0.31 +0.8 1,372,282 - EX28DRAFT_1356 0.31 +0.0 1,372,838 - -0.4 1,372,963 + -0.7 1,372,963 + -0.9 1,373,128 - +0.5 1,373,128 - -0.4 1,373,183 - +0.7 1,373,252 + EX28DRAFT_1357 0.11 -1.9 1,373,457 + EX28DRAFT_1357 0.17 +0.6 1,373,601 + EX28DRAFT_1357 0.20 +0.0 1,373,602 - EX28DRAFT_1357 0.20 -0.8 1,373,602 - EX28DRAFT_1357 0.20 -0.3 1,373,602 - EX28DRAFT_1357 0.20 -0.0 1,373,654 - EX28DRAFT_1357 0.22 -0.2
Or see this region's nucleotide sequence