Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1337 and EX28DRAFT_1338 are separated by 89 nucleotides EX28DRAFT_1338 and EX28DRAFT_1339 are separated by 124 nucleotides EX28DRAFT_1339 and EX28DRAFT_1340 are separated by 119 nucleotides EX28DRAFT_1340 and EX28DRAFT_1341 are separated by 29 nucleotides
EX28DRAFT_1337: EX28DRAFT_1337 - Transcriptional regulator, at 1,332,424 to 1,333,386
_1337
EX28DRAFT_1338: EX28DRAFT_1338 - Sortase and related acyltransferases, at 1,333,476 to 1,333,952
_1338
EX28DRAFT_1339: EX28DRAFT_1339 - Uncharacterized protein conserved in bacteria, at 1,334,077 to 1,334,745
_1339
EX28DRAFT_1340: EX28DRAFT_1340 - Bacterial protein of unknown function (DUF883), at 1,334,865 to 1,335,137
_1340
EX28DRAFT_1341: EX28DRAFT_1341 - FOG: EAL domain, at 1,335,167 to 1,336,630
_1341
Position (kb)
1334
1335 Strain fitness (log2 ratio)
-1
0
1 at 1333.176 kb on - strand, within EX28DRAFT_1337 at 1333.225 kb on - strand, within EX28DRAFT_1337 at 1333.374 kb on + strand at 1333.428 kb on + strand at 1333.429 kb on - strand at 1333.459 kb on - strand at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.524 kb on + strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.525 kb on - strand, within EX28DRAFT_1338 at 1333.537 kb on - strand, within EX28DRAFT_1338 at 1333.661 kb on - strand, within EX28DRAFT_1338 at 1333.661 kb on - strand, within EX28DRAFT_1338 at 1333.722 kb on - strand, within EX28DRAFT_1338 at 1333.734 kb on + strand, within EX28DRAFT_1338 at 1333.787 kb on + strand, within EX28DRAFT_1338 at 1333.880 kb on - strand, within EX28DRAFT_1338 at 1334.034 kb on - strand at 1334.034 kb on - strand at 1334.039 kb on - strand at 1334.064 kb on - strand at 1334.064 kb on - strand at 1334.207 kb on - strand, within EX28DRAFT_1339 at 1334.207 kb on - strand, within EX28DRAFT_1339 at 1334.222 kb on - strand, within EX28DRAFT_1339 at 1334.234 kb on + strand, within EX28DRAFT_1339 at 1334.251 kb on + strand, within EX28DRAFT_1339 at 1334.252 kb on - strand, within EX28DRAFT_1339 at 1334.429 kb on - strand, within EX28DRAFT_1339 at 1334.501 kb on + strand, within EX28DRAFT_1339 at 1334.502 kb on - strand, within EX28DRAFT_1339 at 1334.549 kb on - strand, within EX28DRAFT_1339 at 1334.557 kb on + strand, within EX28DRAFT_1339 at 1334.558 kb on - strand, within EX28DRAFT_1339 at 1334.621 kb on - strand, within EX28DRAFT_1339 at 1334.633 kb on - strand, within EX28DRAFT_1339 at 1334.676 kb on + strand, within EX28DRAFT_1339 at 1334.716 kb on + strand at 1334.720 kb on - strand at 1334.765 kb on + strand at 1334.765 kb on + strand at 1334.766 kb on - strand at 1334.766 kb on - strand at 1334.766 kb on - strand at 1334.841 kb on - strand at 1335.222 kb on - strand at 1335.353 kb on - strand, within EX28DRAFT_1341 at 1335.491 kb on - strand, within EX28DRAFT_1341 at 1335.689 kb on - strand, within EX28DRAFT_1341 at 1335.689 kb on - strand, within EX28DRAFT_1341
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,333,176 - EX28DRAFT_1337 0.78 -0.1 1,333,225 - EX28DRAFT_1337 0.83 -1.7 1,333,374 + -0.2 1,333,428 + -0.8 1,333,429 - +0.3 1,333,459 - -1.2 1,333,524 + EX28DRAFT_1338 0.10 -0.7 1,333,524 + EX28DRAFT_1338 0.10 -0.6 1,333,524 + EX28DRAFT_1338 0.10 -0.2 1,333,525 - EX28DRAFT_1338 0.10 -0.1 1,333,525 - EX28DRAFT_1338 0.10 -0.2 1,333,525 - EX28DRAFT_1338 0.10 +0.4 1,333,537 - EX28DRAFT_1338 0.13 -0.2 1,333,661 - EX28DRAFT_1338 0.39 -0.0 1,333,661 - EX28DRAFT_1338 0.39 -0.4 1,333,722 - EX28DRAFT_1338 0.52 -0.1 1,333,734 + EX28DRAFT_1338 0.54 +1.5 1,333,787 + EX28DRAFT_1338 0.65 -1.5 1,333,880 - EX28DRAFT_1338 0.85 -0.0 1,334,034 - +0.3 1,334,034 - +1.0 1,334,039 - -0.1 1,334,064 - +0.5 1,334,064 - -1.0 1,334,207 - EX28DRAFT_1339 0.19 +0.2 1,334,207 - EX28DRAFT_1339 0.19 +1.0 1,334,222 - EX28DRAFT_1339 0.22 +0.1 1,334,234 + EX28DRAFT_1339 0.23 -1.2 1,334,251 + EX28DRAFT_1339 0.26 -1.0 1,334,252 - EX28DRAFT_1339 0.26 -0.4 1,334,429 - EX28DRAFT_1339 0.53 +0.3 1,334,501 + EX28DRAFT_1339 0.63 -1.0 1,334,502 - EX28DRAFT_1339 0.64 -0.7 1,334,549 - EX28DRAFT_1339 0.71 +0.2 1,334,557 + EX28DRAFT_1339 0.72 +0.5 1,334,558 - EX28DRAFT_1339 0.72 -0.2 1,334,621 - EX28DRAFT_1339 0.81 -0.5 1,334,633 - EX28DRAFT_1339 0.83 -0.3 1,334,676 + EX28DRAFT_1339 0.90 -0.5 1,334,716 + -1.3 1,334,720 - -0.3 1,334,765 + -1.0 1,334,765 + -0.9 1,334,766 - -0.2 1,334,766 - -0.2 1,334,766 - +0.1 1,334,841 - +0.1 1,335,222 - +0.3 1,335,353 - EX28DRAFT_1341 0.13 -0.9 1,335,491 - EX28DRAFT_1341 0.22 -0.1 1,335,689 - EX28DRAFT_1341 0.36 +0.2 1,335,689 - EX28DRAFT_1341 0.36 -0.1
Or see this region's nucleotide sequence