Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1339

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1337 and EX28DRAFT_1338 are separated by 89 nucleotidesEX28DRAFT_1338 and EX28DRAFT_1339 are separated by 124 nucleotidesEX28DRAFT_1339 and EX28DRAFT_1340 are separated by 119 nucleotidesEX28DRAFT_1340 and EX28DRAFT_1341 are separated by 29 nucleotides EX28DRAFT_1337: EX28DRAFT_1337 - Transcriptional regulator, at 1,332,424 to 1,333,386 _1337 EX28DRAFT_1338: EX28DRAFT_1338 - Sortase and related acyltransferases, at 1,333,476 to 1,333,952 _1338 EX28DRAFT_1339: EX28DRAFT_1339 - Uncharacterized protein conserved in bacteria, at 1,334,077 to 1,334,745 _1339 EX28DRAFT_1340: EX28DRAFT_1340 - Bacterial protein of unknown function (DUF883), at 1,334,865 to 1,335,137 _1340 EX28DRAFT_1341: EX28DRAFT_1341 - FOG: EAL domain, at 1,335,167 to 1,336,630 _1341 Position (kb) 1334 1335Strain fitness (log2 ratio) -1 0 1at 1333.176 kb on - strand, within EX28DRAFT_1337at 1333.225 kb on - strand, within EX28DRAFT_1337at 1333.374 kb on + strandat 1333.428 kb on + strandat 1333.429 kb on - strandat 1333.459 kb on - strandat 1333.524 kb on + strand, within EX28DRAFT_1338at 1333.524 kb on + strand, within EX28DRAFT_1338at 1333.524 kb on + strand, within EX28DRAFT_1338at 1333.525 kb on - strand, within EX28DRAFT_1338at 1333.525 kb on - strand, within EX28DRAFT_1338at 1333.525 kb on - strand, within EX28DRAFT_1338at 1333.537 kb on - strand, within EX28DRAFT_1338at 1333.661 kb on - strand, within EX28DRAFT_1338at 1333.661 kb on - strand, within EX28DRAFT_1338at 1333.722 kb on - strand, within EX28DRAFT_1338at 1333.734 kb on + strand, within EX28DRAFT_1338at 1333.787 kb on + strand, within EX28DRAFT_1338at 1333.880 kb on - strand, within EX28DRAFT_1338at 1334.034 kb on - strandat 1334.034 kb on - strandat 1334.039 kb on - strandat 1334.064 kb on - strandat 1334.064 kb on - strandat 1334.207 kb on - strand, within EX28DRAFT_1339at 1334.207 kb on - strand, within EX28DRAFT_1339at 1334.222 kb on - strand, within EX28DRAFT_1339at 1334.234 kb on + strand, within EX28DRAFT_1339at 1334.251 kb on + strand, within EX28DRAFT_1339at 1334.252 kb on - strand, within EX28DRAFT_1339at 1334.429 kb on - strand, within EX28DRAFT_1339at 1334.501 kb on + strand, within EX28DRAFT_1339at 1334.502 kb on - strand, within EX28DRAFT_1339at 1334.549 kb on - strand, within EX28DRAFT_1339at 1334.557 kb on + strand, within EX28DRAFT_1339at 1334.558 kb on - strand, within EX28DRAFT_1339at 1334.621 kb on - strand, within EX28DRAFT_1339at 1334.633 kb on - strand, within EX28DRAFT_1339at 1334.676 kb on + strand, within EX28DRAFT_1339at 1334.716 kb on + strandat 1334.720 kb on - strandat 1334.765 kb on + strandat 1334.765 kb on + strandat 1334.766 kb on - strandat 1334.766 kb on - strandat 1334.766 kb on - strandat 1334.841 kb on - strandat 1335.222 kb on - strandat 1335.353 kb on - strand, within EX28DRAFT_1341at 1335.491 kb on - strand, within EX28DRAFT_1341at 1335.689 kb on - strand, within EX28DRAFT_1341at 1335.689 kb on - strand, within EX28DRAFT_1341

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,333,176 - EX28DRAFT_1337 0.78 -0.1
1,333,225 - EX28DRAFT_1337 0.83 -1.7
1,333,374 + -0.2
1,333,428 + -0.8
1,333,429 - +0.3
1,333,459 - -1.2
1,333,524 + EX28DRAFT_1338 0.10 -0.7
1,333,524 + EX28DRAFT_1338 0.10 -0.6
1,333,524 + EX28DRAFT_1338 0.10 -0.2
1,333,525 - EX28DRAFT_1338 0.10 -0.1
1,333,525 - EX28DRAFT_1338 0.10 -0.2
1,333,525 - EX28DRAFT_1338 0.10 +0.4
1,333,537 - EX28DRAFT_1338 0.13 -0.2
1,333,661 - EX28DRAFT_1338 0.39 -0.0
1,333,661 - EX28DRAFT_1338 0.39 -0.4
1,333,722 - EX28DRAFT_1338 0.52 -0.1
1,333,734 + EX28DRAFT_1338 0.54 +1.5
1,333,787 + EX28DRAFT_1338 0.65 -1.5
1,333,880 - EX28DRAFT_1338 0.85 -0.0
1,334,034 - +0.3
1,334,034 - +1.0
1,334,039 - -0.1
1,334,064 - +0.5
1,334,064 - -1.0
1,334,207 - EX28DRAFT_1339 0.19 +0.2
1,334,207 - EX28DRAFT_1339 0.19 +1.0
1,334,222 - EX28DRAFT_1339 0.22 +0.1
1,334,234 + EX28DRAFT_1339 0.23 -1.2
1,334,251 + EX28DRAFT_1339 0.26 -1.0
1,334,252 - EX28DRAFT_1339 0.26 -0.4
1,334,429 - EX28DRAFT_1339 0.53 +0.3
1,334,501 + EX28DRAFT_1339 0.63 -1.0
1,334,502 - EX28DRAFT_1339 0.64 -0.7
1,334,549 - EX28DRAFT_1339 0.71 +0.2
1,334,557 + EX28DRAFT_1339 0.72 +0.5
1,334,558 - EX28DRAFT_1339 0.72 -0.2
1,334,621 - EX28DRAFT_1339 0.81 -0.5
1,334,633 - EX28DRAFT_1339 0.83 -0.3
1,334,676 + EX28DRAFT_1339 0.90 -0.5
1,334,716 + -1.3
1,334,720 - -0.3
1,334,765 + -1.0
1,334,765 + -0.9
1,334,766 - -0.2
1,334,766 - -0.2
1,334,766 - +0.1
1,334,841 - +0.1
1,335,222 - +0.3
1,335,353 - EX28DRAFT_1341 0.13 -0.9
1,335,491 - EX28DRAFT_1341 0.22 -0.1
1,335,689 - EX28DRAFT_1341 0.36 +0.2
1,335,689 - EX28DRAFT_1341 0.36 -0.1

Or see this region's nucleotide sequence