Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1225

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1224 and EX28DRAFT_1225 overlap by 21 nucleotidesEX28DRAFT_1225 and EX28DRAFT_1226 are separated by 174 nucleotides EX28DRAFT_1224: EX28DRAFT_1224 - benzoate transporter, at 1,241,938 to 1,243,104 _1224 EX28DRAFT_1225: EX28DRAFT_1225 - Helix-turn-helix domain, at 1,243,084 to 1,243,956 _1225 EX28DRAFT_1226: EX28DRAFT_1226 - EamA-like transporter family/Multidrug resistance efflux transporter, at 1,244,131 to 1,245,027 _1226 Position (kb) 1243 1244Strain fitness (log2 ratio) -1 0 1at 1242.228 kb on + strand, within EX28DRAFT_1224at 1242.730 kb on - strand, within EX28DRAFT_1224at 1242.829 kb on + strand, within EX28DRAFT_1224at 1242.944 kb on + strand, within EX28DRAFT_1224at 1242.944 kb on + strand, within EX28DRAFT_1224at 1242.944 kb on + strand, within EX28DRAFT_1224at 1242.945 kb on - strand, within EX28DRAFT_1224at 1242.945 kb on - strand, within EX28DRAFT_1224at 1243.067 kb on + strandat 1243.072 kb on + strandat 1243.073 kb on - strandat 1243.073 kb on - strandat 1243.103 kb on - strandat 1243.103 kb on - strandat 1243.103 kb on - strandat 1243.253 kb on + strand, within EX28DRAFT_1225at 1243.253 kb on + strand, within EX28DRAFT_1225at 1243.253 kb on + strand, within EX28DRAFT_1225at 1243.254 kb on - strand, within EX28DRAFT_1225at 1243.449 kb on - strand, within EX28DRAFT_1225at 1243.661 kb on + strand, within EX28DRAFT_1225at 1243.803 kb on - strand, within EX28DRAFT_1225at 1243.816 kb on - strand, within EX28DRAFT_1225at 1243.856 kb on + strand, within EX28DRAFT_1225at 1243.939 kb on - strandat 1243.992 kb on - strandat 1244.131 kb on - strandat 1244.141 kb on + strandat 1244.142 kb on - strandat 1244.325 kb on + strand, within EX28DRAFT_1226at 1244.356 kb on - strand, within EX28DRAFT_1226at 1244.434 kb on + strand, within EX28DRAFT_1226at 1244.434 kb on + strand, within EX28DRAFT_1226at 1244.434 kb on + strand, within EX28DRAFT_1226at 1244.606 kb on - strand, within EX28DRAFT_1226at 1244.764 kb on + strand, within EX28DRAFT_1226at 1244.764 kb on + strand, within EX28DRAFT_1226at 1244.783 kb on - strand, within EX28DRAFT_1226at 1244.822 kb on - strand, within EX28DRAFT_1226at 1244.842 kb on - strand, within EX28DRAFT_1226at 1244.842 kb on - strand, within EX28DRAFT_1226at 1244.864 kb on - strand, within EX28DRAFT_1226at 1244.905 kb on - strand, within EX28DRAFT_1226at 1244.912 kb on - strand, within EX28DRAFT_1226at 1244.912 kb on - strand, within EX28DRAFT_1226at 1244.920 kb on + strand, within EX28DRAFT_1226at 1244.921 kb on - strand, within EX28DRAFT_1226at 1244.921 kb on - strand, within EX28DRAFT_1226at 1244.940 kb on + strandat 1244.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,242,228 + EX28DRAFT_1224 0.25 -0.1
1,242,730 - EX28DRAFT_1224 0.68 +0.0
1,242,829 + EX28DRAFT_1224 0.76 -0.2
1,242,944 + EX28DRAFT_1224 0.86 +0.3
1,242,944 + EX28DRAFT_1224 0.86 -0.3
1,242,944 + EX28DRAFT_1224 0.86 -0.9
1,242,945 - EX28DRAFT_1224 0.86 +0.3
1,242,945 - EX28DRAFT_1224 0.86 -0.0
1,243,067 + +1.0
1,243,072 + -0.4
1,243,073 - -0.7
1,243,073 - +0.4
1,243,103 - +0.6
1,243,103 - +0.6
1,243,103 - -0.1
1,243,253 + EX28DRAFT_1225 0.19 +0.0
1,243,253 + EX28DRAFT_1225 0.19 +0.5
1,243,253 + EX28DRAFT_1225 0.19 +0.3
1,243,254 - EX28DRAFT_1225 0.19 -0.1
1,243,449 - EX28DRAFT_1225 0.42 +0.2
1,243,661 + EX28DRAFT_1225 0.66 -1.1
1,243,803 - EX28DRAFT_1225 0.82 -1.7
1,243,816 - EX28DRAFT_1225 0.84 +0.1
1,243,856 + EX28DRAFT_1225 0.88 -1.2
1,243,939 - +0.0
1,243,992 - +0.3
1,244,131 - +0.3
1,244,141 + +0.1
1,244,142 - +0.3
1,244,325 + EX28DRAFT_1226 0.22 +0.7
1,244,356 - EX28DRAFT_1226 0.25 +0.0
1,244,434 + EX28DRAFT_1226 0.34 -0.9
1,244,434 + EX28DRAFT_1226 0.34 +0.5
1,244,434 + EX28DRAFT_1226 0.34 +0.4
1,244,606 - EX28DRAFT_1226 0.53 +0.2
1,244,764 + EX28DRAFT_1226 0.71 -0.4
1,244,764 + EX28DRAFT_1226 0.71 -0.8
1,244,783 - EX28DRAFT_1226 0.73 -0.5
1,244,822 - EX28DRAFT_1226 0.77 +0.1
1,244,842 - EX28DRAFT_1226 0.79 +1.4
1,244,842 - EX28DRAFT_1226 0.79 -0.3
1,244,864 - EX28DRAFT_1226 0.82 -1.0
1,244,905 - EX28DRAFT_1226 0.86 -0.2
1,244,912 - EX28DRAFT_1226 0.87 +0.8
1,244,912 - EX28DRAFT_1226 0.87 -0.5
1,244,920 + EX28DRAFT_1226 0.88 -0.2
1,244,921 - EX28DRAFT_1226 0.88 +0.4
1,244,921 - EX28DRAFT_1226 0.88 +0.3
1,244,940 + -0.0
1,244,941 - -0.3

Or see this region's nucleotide sequence