Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1177

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1175 and EX28DRAFT_1176 are separated by 100 nucleotidesEX28DRAFT_1176 and EX28DRAFT_1177 are separated by 149 nucleotidesEX28DRAFT_1177 and EX28DRAFT_1178 are separated by 38 nucleotidesEX28DRAFT_1178 and EX28DRAFT_1179 are separated by 86 nucleotides EX28DRAFT_1175: EX28DRAFT_1175 - Domain of unknown function (DUF4354), at 1,197,472 to 1,197,900 _1175 EX28DRAFT_1176: EX28DRAFT_1176 - Predicted lactoylglutathione lyase, at 1,198,001 to 1,198,360 _1176 EX28DRAFT_1177: EX28DRAFT_1177 - Domain of unknown function (DUF4406), at 1,198,510 to 1,198,872 _1177 EX28DRAFT_1178: EX28DRAFT_1178 - transcriptional regulator, DeoR family, at 1,198,911 to 1,199,684 _1178 EX28DRAFT_1179: EX28DRAFT_1179 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 1,199,771 to 1,200,367 _1179 Position (kb) 1198 1199Strain fitness (log2 ratio) -2 -1 0 1 2at 1197.643 kb on + strand, within EX28DRAFT_1175at 1197.646 kb on - strand, within EX28DRAFT_1175at 1197.655 kb on + strand, within EX28DRAFT_1175at 1197.657 kb on + strand, within EX28DRAFT_1175at 1197.711 kb on + strand, within EX28DRAFT_1175at 1197.712 kb on - strand, within EX28DRAFT_1175at 1197.807 kb on + strand, within EX28DRAFT_1175at 1197.807 kb on + strand, within EX28DRAFT_1175at 1197.808 kb on - strand, within EX28DRAFT_1175at 1197.951 kb on + strandat 1197.951 kb on + strandat 1197.951 kb on + strandat 1197.952 kb on - strandat 1197.952 kb on - strandat 1197.954 kb on - strandat 1198.217 kb on + strand, within EX28DRAFT_1176at 1198.274 kb on + strand, within EX28DRAFT_1176at 1198.275 kb on - strand, within EX28DRAFT_1176at 1198.286 kb on + strand, within EX28DRAFT_1176at 1198.286 kb on + strand, within EX28DRAFT_1176at 1198.286 kb on + strand, within EX28DRAFT_1176at 1198.287 kb on - strand, within EX28DRAFT_1176at 1198.287 kb on - strand, within EX28DRAFT_1176at 1198.289 kb on + strand, within EX28DRAFT_1176at 1198.290 kb on - strand, within EX28DRAFT_1176at 1198.359 kb on - strandat 1198.385 kb on + strandat 1198.429 kb on + strandat 1198.461 kb on - strandat 1198.524 kb on - strandat 1198.748 kb on + strand, within EX28DRAFT_1177at 1198.769 kb on - strand, within EX28DRAFT_1177at 1198.826 kb on - strand, within EX28DRAFT_1177at 1198.826 kb on - strand, within EX28DRAFT_1177at 1198.840 kb on + strandat 1199.202 kb on - strand, within EX28DRAFT_1178at 1199.255 kb on - strand, within EX28DRAFT_1178at 1199.255 kb on - strand, within EX28DRAFT_1178at 1199.255 kb on - strand, within EX28DRAFT_1178at 1199.255 kb on - strand, within EX28DRAFT_1178at 1199.255 kb on - strand, within EX28DRAFT_1178at 1199.539 kb on - strand, within EX28DRAFT_1178at 1199.606 kb on + strand, within EX28DRAFT_1178at 1199.610 kb on + strandat 1199.611 kb on - strandat 1199.739 kb on - strandat 1199.747 kb on + strandat 1199.748 kb on - strandat 1199.753 kb on - strandat 1199.753 kb on - strandat 1199.840 kb on - strand, within EX28DRAFT_1179at 1199.846 kb on + strand, within EX28DRAFT_1179

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,197,643 + EX28DRAFT_1175 0.40 -2.3
1,197,646 - EX28DRAFT_1175 0.41 +1.2
1,197,655 + EX28DRAFT_1175 0.43 -0.5
1,197,657 + EX28DRAFT_1175 0.43 -1.4
1,197,711 + EX28DRAFT_1175 0.56 -0.3
1,197,712 - EX28DRAFT_1175 0.56 -0.5
1,197,807 + EX28DRAFT_1175 0.78 -0.1
1,197,807 + EX28DRAFT_1175 0.78 -0.1
1,197,808 - EX28DRAFT_1175 0.78 -0.7
1,197,951 + -0.3
1,197,951 + +0.6
1,197,951 + +0.3
1,197,952 - +1.9
1,197,952 - -0.4
1,197,954 - +0.3
1,198,217 + EX28DRAFT_1176 0.60 +0.0
1,198,274 + EX28DRAFT_1176 0.76 +0.0
1,198,275 - EX28DRAFT_1176 0.76 +0.4
1,198,286 + EX28DRAFT_1176 0.79 +0.1
1,198,286 + EX28DRAFT_1176 0.79 -1.0
1,198,286 + EX28DRAFT_1176 0.79 +0.5
1,198,287 - EX28DRAFT_1176 0.79 -0.8
1,198,287 - EX28DRAFT_1176 0.79 +0.2
1,198,289 + EX28DRAFT_1176 0.80 +1.6
1,198,290 - EX28DRAFT_1176 0.80 -0.1
1,198,359 - -0.2
1,198,385 + +0.4
1,198,429 + +0.6
1,198,461 - +0.1
1,198,524 - -0.1
1,198,748 + EX28DRAFT_1177 0.66 +0.2
1,198,769 - EX28DRAFT_1177 0.71 -0.4
1,198,826 - EX28DRAFT_1177 0.87 -0.1
1,198,826 - EX28DRAFT_1177 0.87 -1.4
1,198,840 + -0.2
1,199,202 - EX28DRAFT_1178 0.38 -0.3
1,199,255 - EX28DRAFT_1178 0.44 +0.1
1,199,255 - EX28DRAFT_1178 0.44 -0.4
1,199,255 - EX28DRAFT_1178 0.44 +1.5
1,199,255 - EX28DRAFT_1178 0.44 +0.1
1,199,255 - EX28DRAFT_1178 0.44 +0.4
1,199,539 - EX28DRAFT_1178 0.81 +0.0
1,199,606 + EX28DRAFT_1178 0.90 -2.1
1,199,610 + -0.1
1,199,611 - -0.6
1,199,739 - -0.3
1,199,747 + +0.0
1,199,748 - -0.3
1,199,753 - -0.1
1,199,753 - -0.1
1,199,840 - EX28DRAFT_1179 0.12 -0.0
1,199,846 + EX28DRAFT_1179 0.13 +0.5

Or see this region's nucleotide sequence