Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1166 and EX28DRAFT_1167 are separated by 28 nucleotides EX28DRAFT_1167 and EX28DRAFT_1168 are separated by 11 nucleotides EX28DRAFT_1168 and EX28DRAFT_1169 are separated by 10 nucleotides
EX28DRAFT_1166: EX28DRAFT_1166 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,187,360 to 1,188,745
_1166
EX28DRAFT_1167: EX28DRAFT_1167 - Uncharacterized conserved protein, at 1,188,774 to 1,189,115
_1167
EX28DRAFT_1168: EX28DRAFT_1168 - RND family efflux transporter, MFP subunit, at 1,189,127 to 1,190,377
_1168
EX28DRAFT_1169: EX28DRAFT_1169 - heavy metal efflux pump, CzcA family, at 1,190,388 to 1,193,528
_1169
Position (kb)
1189
1190
1191 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1188.209 kb on - strand, within EX28DRAFT_1166 at 1188.211 kb on + strand, within EX28DRAFT_1166 at 1188.391 kb on + strand, within EX28DRAFT_1166 at 1188.406 kb on + strand, within EX28DRAFT_1166 at 1188.419 kb on - strand, within EX28DRAFT_1166 at 1188.458 kb on + strand, within EX28DRAFT_1166 at 1188.459 kb on - strand, within EX28DRAFT_1166 at 1188.523 kb on + strand, within EX28DRAFT_1166 at 1188.595 kb on - strand, within EX28DRAFT_1166 at 1188.595 kb on - strand, within EX28DRAFT_1166 at 1188.597 kb on - strand, within EX28DRAFT_1166 at 1188.617 kb on + strand at 1188.749 kb on + strand at 1188.788 kb on + strand at 1188.941 kb on + strand, within EX28DRAFT_1167 at 1189.110 kb on - strand at 1189.149 kb on - strand at 1189.161 kb on + strand at 1189.272 kb on - strand, within EX28DRAFT_1168 at 1189.422 kb on + strand, within EX28DRAFT_1168 at 1189.457 kb on + strand, within EX28DRAFT_1168 at 1189.457 kb on + strand, within EX28DRAFT_1168 at 1189.458 kb on - strand, within EX28DRAFT_1168 at 1189.487 kb on + strand, within EX28DRAFT_1168 at 1189.490 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.598 kb on - strand, within EX28DRAFT_1168 at 1189.600 kb on + strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.676 kb on - strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.825 kb on + strand, within EX28DRAFT_1168 at 1189.837 kb on + strand, within EX28DRAFT_1168 at 1189.837 kb on + strand, within EX28DRAFT_1168 at 1189.936 kb on + strand, within EX28DRAFT_1168 at 1190.081 kb on + strand, within EX28DRAFT_1168 at 1190.311 kb on + strand at 1190.312 kb on - strand at 1190.587 kb on - strand at 1190.587 kb on - strand at 1190.662 kb on - strand at 1190.668 kb on - strand at 1190.697 kb on + strand at 1191.072 kb on + strand, within EX28DRAFT_1169 at 1191.072 kb on + strand, within EX28DRAFT_1169 at 1191.072 kb on + strand, within EX28DRAFT_1169 at 1191.072 kb on + strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.073 kb on - strand, within EX28DRAFT_1169 at 1191.074 kb on + strand, within EX28DRAFT_1169 at 1191.075 kb on - strand, within EX28DRAFT_1169 at 1191.349 kb on + strand, within EX28DRAFT_1169 at 1191.360 kb on + strand, within EX28DRAFT_1169 at 1191.361 kb on - strand, within EX28DRAFT_1169 at 1191.361 kb on - strand, within EX28DRAFT_1169
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,188,209 - EX28DRAFT_1166 0.61 -0.1 1,188,211 + EX28DRAFT_1166 0.61 -0.1 1,188,391 + EX28DRAFT_1166 0.74 -3.1 1,188,406 + EX28DRAFT_1166 0.75 -0.3 1,188,419 - EX28DRAFT_1166 0.76 -0.2 1,188,458 + EX28DRAFT_1166 0.79 -0.2 1,188,459 - EX28DRAFT_1166 0.79 +0.3 1,188,523 + EX28DRAFT_1166 0.84 -0.4 1,188,595 - EX28DRAFT_1166 0.89 -2.2 1,188,595 - EX28DRAFT_1166 0.89 +0.6 1,188,597 - EX28DRAFT_1166 0.89 -0.6 1,188,617 + -0.4 1,188,749 + -1.5 1,188,788 + +0.1 1,188,941 + EX28DRAFT_1167 0.49 -0.2 1,189,110 - -0.4 1,189,149 - -0.1 1,189,161 + -0.2 1,189,272 - EX28DRAFT_1168 0.12 -0.0 1,189,422 + EX28DRAFT_1168 0.24 -0.4 1,189,457 + EX28DRAFT_1168 0.26 -0.4 1,189,457 + EX28DRAFT_1168 0.26 +0.9 1,189,458 - EX28DRAFT_1168 0.26 -0.5 1,189,487 + EX28DRAFT_1168 0.29 +0.4 1,189,490 - EX28DRAFT_1168 0.29 -0.1 1,189,598 - EX28DRAFT_1168 0.38 -1.4 1,189,598 - EX28DRAFT_1168 0.38 -0.2 1,189,598 - EX28DRAFT_1168 0.38 +0.5 1,189,600 + EX28DRAFT_1168 0.38 -0.2 1,189,676 - EX28DRAFT_1168 0.44 +0.3 1,189,676 - EX28DRAFT_1168 0.44 -0.5 1,189,676 - EX28DRAFT_1168 0.44 -0.3 1,189,825 + EX28DRAFT_1168 0.56 -0.7 1,189,825 + EX28DRAFT_1168 0.56 -0.6 1,189,825 + EX28DRAFT_1168 0.56 +0.1 1,189,837 + EX28DRAFT_1168 0.57 -0.7 1,189,837 + EX28DRAFT_1168 0.57 +0.8 1,189,936 + EX28DRAFT_1168 0.65 +0.2 1,190,081 + EX28DRAFT_1168 0.76 -0.9 1,190,311 + -0.2 1,190,312 - -0.1 1,190,587 - +0.2 1,190,587 - +1.2 1,190,662 - -0.2 1,190,668 - -0.7 1,190,697 + +0.9 1,191,072 + EX28DRAFT_1169 0.22 -0.5 1,191,072 + EX28DRAFT_1169 0.22 -0.2 1,191,072 + EX28DRAFT_1169 0.22 +0.5 1,191,072 + EX28DRAFT_1169 0.22 -0.0 1,191,073 - EX28DRAFT_1169 0.22 -0.4 1,191,073 - EX28DRAFT_1169 0.22 -0.1 1,191,073 - EX28DRAFT_1169 0.22 -1.2 1,191,073 - EX28DRAFT_1169 0.22 -0.5 1,191,073 - EX28DRAFT_1169 0.22 -1.3 1,191,073 - EX28DRAFT_1169 0.22 +0.2 1,191,074 + EX28DRAFT_1169 0.22 -0.2 1,191,075 - EX28DRAFT_1169 0.22 +0.1 1,191,349 + EX28DRAFT_1169 0.31 -0.3 1,191,360 + EX28DRAFT_1169 0.31 -0.5 1,191,361 - EX28DRAFT_1169 0.31 -1.1 1,191,361 - EX28DRAFT_1169 0.31 -0.2
Or see this region's nucleotide sequence